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PeteHaitch
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DelayedMatrixStats
A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package
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Plans for rowsum?
#52
MalteThodberg
closed
6 years ago
2
Consider adding `withDimnames`-type argument to all generics
#51
PeteHaitch
opened
6 years ago
0
rowAvgsPerColSet2
#50
PeteHaitch
opened
6 years ago
0
Test more data_seeds?
#49
PeteHaitch
opened
6 years ago
0
Update installation instructions in README
#48
PeteHaitch
opened
6 years ago
0
README benchmarking
#47
PeteHaitch
opened
6 years ago
0
Categorise methods and refactor code base
#46
PeteHaitch
opened
6 years ago
1
DelayedArray:::is_pristine() no longer available
#45
PeteHaitch
closed
6 years ago
6
as.data.frame method
#44
PeteHaitch
opened
6 years ago
0
Use implicitGeneric
#43
PeteHaitch
opened
6 years ago
0
Add progress bars
#42
PeteHaitch
opened
6 years ago
0
Re-export matrixStats API rather than DEPEND on it?
#41
PeteHaitch
closed
6 years ago
1
NEWS.md to NEWS
#40
PeteHaitch
opened
6 years ago
0
REVDEP matrixStats: formals(dms_generic) not identical to formals(ms_fun)
#39
HenrikBengtsson
closed
6 years ago
3
Fast colRanks implementation in scran
#38
LTLA
opened
6 years ago
0
Wrap arbitrary matrix-like objects in DelayedArray() to allow arbitrary dispatch
#37
PeteHaitch
opened
6 years ago
2
Use debugme
#36
PeteHaitch
opened
6 years ago
0
Priorities
#35
PeteHaitch
opened
6 years ago
0
Remove dependency on unreleased version of matrixStats
#34
PeteHaitch
closed
7 years ago
0
Generics and methods already in DelayedArray
#33
PeteHaitch
opened
7 years ago
0
Automagic updating of inherited documentation
#32
PeteHaitch
opened
7 years ago
0
Reconcile README and vignette
#31
PeteHaitch
opened
7 years ago
0
API table in vignette
#30
PeteHaitch
opened
7 years ago
0
Update installation instructions in README
#29
PeteHaitch
opened
7 years ago
0
Explain how delayed ops are realised and use of `force_block_processing`
#28
PeteHaitch
closed
7 years ago
0
Run BiocCheck::BiocCheck()
#27
PeteHaitch
closed
6 years ago
2
Compare to just loading data into memory
#26
PeteHaitch
opened
7 years ago
0
[Enhancement]: Add examples to docs
#25
PeteHaitch
closed
7 years ago
2
Additional non-matrixStats methods
#24
PeteHaitch
opened
7 years ago
0
Additional matrixStats functions
#23
PeteHaitch
opened
7 years ago
1
Use `setNames()` instead of `dimnames<-()` when appropriate
#22
PeteHaitch
closed
7 years ago
1
Use named args in all function calls
#21
PeteHaitch
closed
7 years ago
2
Dimensions of returned value vary by method
#20
PeteHaitch
closed
7 years ago
1
DRY unit tests
#19
PeteHaitch
opened
7 years ago
0
Check answer type
#18
PeteHaitch
closed
7 years ago
0
Ensure full range of args of methods are tested
#17
PeteHaitch
opened
7 years ago
0
Test with small block size
#16
PeteHaitch
closed
7 years ago
2
[Question]: Ownership of generics
#15
PeteHaitch
closed
7 years ago
1
Location of dots in generic/method signatures
#14
PeteHaitch
closed
6 years ago
3
What to do with `dim.` arg?
#13
PeteHaitch
opened
7 years ago
0
colCounts()/rowCounts() subject to (in)equality
#12
PeteHaitch
opened
7 years ago
0
Provide support for different realization strategies (via BACKEND)
#11
PeteHaitch
opened
7 years ago
2
Provide support for multicore (perhaps via BPPARAM)
#10
PeteHaitch
opened
7 years ago
1
Unit tests for generic signature
#9
PeteHaitch
closed
7 years ago
2
Methods for HDF5Matrix objects
#8
PeteHaitch
opened
7 years ago
1
Block vs. row. vs. column processing
#7
PeteHaitch
closed
7 years ago
1
Subset-then-compute vs. compute-then-subset
#6
PeteHaitch
opened
7 years ago
0
Optimisation level of implementation
#5
PeteHaitch
opened
7 years ago
0
Add checklist of supported API to README
#4
PeteHaitch
closed
7 years ago
0
DelayedMatrix with a BigWig-derived seed
#3
PeteHaitch
closed
7 years ago
2
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