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PlantandFoodResearch
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TEFingerprint
A Python3 library for transposon fingerprinting
MIT License
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Fix identification of full length informative reads when using single end reads
#133
timothymillar
opened
4 years ago
0
v0.3.2
#132
timothymillar
closed
5 years ago
0
changelog
#131
timothymillar
closed
5 years ago
0
Documentation and version bumb for v0.3.2
#130
timothymillar
closed
5 years ago
0
F/docs
#129
timothymillar
closed
5 years ago
0
update travis to latest miniconda3
#128
timothymillar
closed
5 years ago
0
Makefile
#127
timothymillar
closed
5 years ago
0
F/docs
#126
timothymillar
closed
5 years ago
0
MIT Licence
#125
timothymillar
closed
5 years ago
0
Investigate identifying new insertions using Median absolute deviation
#124
timothymillar
closed
5 years ago
1
GFF3 standard
#123
timothymillar
opened
5 years ago
0
Add license 1
#122
timothymillar
closed
5 years ago
1
Check for reference index before running preprocess
#121
timothymillar
opened
5 years ago
0
transposon families flag
#120
cflsjt
opened
5 years ago
1
Add a list of bamfiles flag
#119
cflsjt
opened
5 years ago
1
Dev
#118
timothymillar
closed
5 years ago
0
Fix Anaconda in Travis CI
#117
timothymillar
closed
5 years ago
1
Dev
#116
timothymillar
closed
5 years ago
1
Re add in proportion of max count
#115
timothymillar
closed
5 years ago
2
tef-filter-gff chaining filters into a bgzipped output fails
#114
timothymillar
closed
5 years ago
1
v0.3.0
#113
timothymillar
closed
6 years ago
0
F/docs
#112
timothymillar
closed
6 years ago
0
F/docs
#111
timothymillar
closed
6 years ago
0
Options to use tip softclips and or exclude full length informative reads
#110
timothymillar
closed
6 years ago
0
F/104 bgzip
#109
timothymillar
closed
6 years ago
0
F/106 tempfiles
#108
timothymillar
closed
6 years ago
0
reorganise submodules
#107
timothymillar
closed
6 years ago
0
Clean up extract-informative temp files
#106
timothymillar
closed
6 years ago
1
F/docs - clarify differences from dbscan
#105
timothymillar
closed
6 years ago
0
Add bgzip compression
#104
timothymillar
closed
6 years ago
1
CSV/TSV output
#103
timothymillar
closed
6 years ago
1
case notation
#102
timothymillar
closed
6 years ago
0
update method docs
#101
timothymillar
closed
6 years ago
0
python 3 shebang lines
#100
timothymillar
closed
6 years ago
0
Cluster support notation
#99
timothymillar
closed
6 years ago
1
Python 3 specific shebang lines
#98
timothymillar
closed
6 years ago
1
v0.2.0 conservative clustering algorithm
#97
timothymillar
closed
6 years ago
0
F/docs
#96
timothymillar
closed
6 years ago
0
Miscalculation of parent vs child area
#95
timothymillar
closed
6 years ago
1
F/pypi
#94
timothymillar
closed
6 years ago
0
F/pypi
#93
timothymillar
closed
6 years ago
0
F/conservative splits
#92
timothymillar
closed
6 years ago
0
More conservative splitting with hierarchical clustering
#91
timothymillar
closed
6 years ago
1
Miscalculation of support for initial clusters
#90
timothymillar
closed
6 years ago
0
Package for PyPI
#89
timothymillar
opened
6 years ago
0
Add License
#88
timothymillar
closed
5 years ago
1
v0.1.4 refactor core and new features
#87
timothymillar
closed
6 years ago
0
Handle gzipped gff/csv inputs/outputs
#86
timothymillar
closed
6 years ago
1
v0.1.4 refactor core and new features
#85
timothymillar
closed
6 years ago
0
Update filter-gff for new gff format
#84
timothymillar
closed
6 years ago
1
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