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PolarizedLightFieldMicroscopy
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GeoBirT
Geometrical Birefringence Tomography
BSD 3-Clause "New" or "Revised" License
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Voxel mask should also be appropriate for even axial dimension
#103
gschlafly
opened
1 week ago
0
June
#102
gschlafly
closed
1 week ago
0
Structure
#101
gschlafly
closed
1 month ago
0
Big updates: su2 retardance, euler metric, azimuth adjustment
#100
gschlafly
closed
1 month ago
0
Use radiometry image to mask rays
#99
gschlafly
opened
2 months ago
2
Raytrace with entire MLA at once
#98
gschlafly
closed
2 months ago
0
New optimization method to focus on a subset of voxels
#97
gschlafly
closed
2 months ago
1
Xylem mla65
#96
gschlafly
closed
2 months ago
0
Reconstruct from intensity images
#95
gschlafly
closed
2 months ago
0
Control of regularization terms
#94
gschlafly
closed
3 months ago
0
MLA indexing and supersampling voxel size fixes
#93
gschlafly
closed
3 months ago
1
Containment
#92
gschlafly
closed
3 months ago
0
Decreasing to an even # of pixels causes need for larger volume
#91
gschlafly
opened
3 months ago
0
Artifacts with 3 microlenses
#90
gschlafly
opened
3 months ago
3
Predicted retardance image resembles rotated measured retardance image
#89
gschlafly
closed
3 months ago
2
Mask containing only the voxels of interest
#88
gschlafly
closed
2 months ago
0
Mask
#87
gschlafly
closed
4 months ago
1
Indexing to retrieve Siddon algorithm outputs
#86
gschlafly
closed
5 months ago
3
Xylem
#85
gschlafly
closed
5 months ago
1
Forward simulation of the helix is black
#84
gschlafly
opened
5 months ago
1
Turn MIP into the maximum of the birefringence instead of sum
#83
gschlafly
closed
4 months ago
1
Enable unique learning rates
#82
gschlafly
closed
6 months ago
0
Raytrace only when retardance is nonzero
#81
gschlafly
closed
6 months ago
0
Data fidelity term plateau
#80
gschlafly
opened
6 months ago
0
Initialize nonzero_pixels_dict in reconstruction
#79
gschlafly
closed
6 months ago
1
Fix passing of mla index through functions
#78
gschlafly
closed
6 months ago
0
Select particular rays
#77
gschlafly
closed
6 months ago
0
Pass mla index arg to apply mask that is specific to the microlens index
#76
gschlafly
closed
6 months ago
0
Test to verify that the reconstruction is identical to the GT when using the GT as the initial guess
#75
gschlafly
opened
6 months ago
0
Modularize ray geometry computation
#74
gschlafly
closed
6 months ago
0
Store valid rays specific to each microlens
#73
gschlafly
closed
6 months ago
7
Update streamlit pages to use simulator classes
#72
gschlafly
opened
6 months ago
1
Adjust import of pandas package
#71
gschlafly
closed
6 months ago
0
Update stream branch
#70
gschlafly
closed
6 months ago
0
Reduce main module count
#69
gschlafly
closed
6 months ago
0
Refactor birefringence implementations module
#68
gschlafly
closed
7 months ago
0
Propagate gradients through a subset of an array
#67
gschlafly
closed
4 months ago
3
Restrict optimization to voxels that causes nonzero retardance
#66
gschlafly
closed
7 months ago
0
Loss function modularity beginning
#65
gschlafly
closed
7 months ago
0
Independence of volume creation and microscope configuration
#64
gschlafly
opened
8 months ago
0
Modularization
#63
gschlafly
closed
8 months ago
0
Stream recon
#62
gschlafly
closed
9 months ago
0
Norm optic axis projection in torch
#61
gschlafly
closed
9 months ago
1
Dataset creation
#60
gschlafly
closed
10 months ago
0
Pytorch jones matrix calculation out of range index
#59
gschlafly
opened
10 months ago
4
Non-matching device for dot product operation
#58
gschlafly
closed
9 months ago
1
Can not supersample if volume is too thin
#57
gschlafly
opened
10 months ago
0
Failing reconstruction when using supersampling
#56
gschlafly
closed
3 months ago
4
Occasional fail of test comparing azimuth values
#55
gschlafly
closed
1 month ago
0
Initial estimated volume feature
#54
gschlafly
closed
10 months ago
0
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