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PoonLab
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OpenRDP
An open-source re-implementation of the RDP4 recombination detection program
GNU General Public License v3.0
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Remove of identical sequences may cause names to go out of sync
#47
ArtPoon
closed
1 year ago
0
DNA_ALPHABET does not include IUPAC symbols
#46
ArtPoon
opened
1 year ago
5
Expose Scanner object to Python interface
#45
ArtPoon
closed
1 year ago
0
fixes to python interface
#44
ArtPoon
closed
1 year ago
0
bootscan: use tempfile instead of writing .h5 files to user dir
#43
ArtPoon
closed
1 year ago
0
Dev
#42
ArtPoon
closed
1 year ago
0
Interface
#41
ArtPoon
closed
1 year ago
3
AttributeError: module '__main__' has no attribute '__spec__'
#40
ArtPoon
closed
1 year ago
2
3Seq: no such file or directory
#39
ArtPoon
closed
1 year ago
6
User interface improvements
#38
ArtPoon
closed
1 year ago
12
Iss32
#37
ArtPoon
closed
1 year ago
2
Optimize memory
#36
ArtPoon
closed
1 year ago
1
Failed in installation
#35
renee9904
closed
1 year ago
7
Packaging Python script
#34
traneric
opened
2 years ago
4
Typo in default config
#33
sejmodha
closed
2 years ago
2
Threads and Memory options
#32
sejmodha
closed
1 year ago
32
Strange gdk error messages in interactive mode
#31
ArtPoon
closed
1 year ago
3
Write setup.py script
#30
ArtPoon
closed
2 years ago
0
No GENECONV binary executable for macOS
#29
ArtPoon
closed
2 years ago
0
Random seed not properly set for Bootscan and Siscan
#28
kwade4
closed
2 years ago
0
Write a README
#27
ArtPoon
closed
2 years ago
0
Create LICENSE
#26
ArtPoon
closed
2 years ago
0
Choose a license
#25
ArtPoon
closed
2 years ago
3
Quiet option for progress monitoring by stdout
#24
ArtPoon
closed
2 years ago
0
Output formatting
#23
ArtPoon
closed
2 years ago
1
Handle variable length windows
#22
kwade4
closed
2 years ago
1
Licenses for binaries
#21
kwade4
closed
2 years ago
5
Incorrect coordinates due to indexing errors
#20
kwade4
closed
2 years ago
1
Remove identical sequences
#19
kwade4
closed
2 years ago
0
MaxChi outputs breakpoints multiple times
#18
kwade4
closed
3 years ago
1
Discrepancy in the width of recombinant regions
#17
kwade4
closed
2 years ago
3
Refactor to process triplets one at a time
#16
kwade4
closed
3 years ago
0
Implement Bootscan
#15
kwade4
closed
3 years ago
0
Incorporate CHIMAERA method
#14
kwade4
closed
3 years ago
1
Test detection methods
#13
kwade4
closed
3 years ago
0
Model Selection
#12
kwade4
closed
3 years ago
3
Incorporate MaxChi Method
#11
kwade4
closed
3 years ago
0
Incorporate 3Seq method
#10
kwade4
closed
3 years ago
1
Incorporate SiScan method
#9
kwade4
closed
3 years ago
0
Read configuration options from file
#8
kwade4
closed
3 years ago
1
Gather and clean data
#7
kwade4
closed
3 years ago
2
Incorporate geneconv method
#6
kwade4
closed
3 years ago
0
Process and validate command line arguments
#5
kwade4
closed
3 years ago
1
Implement RDP Method
#4
kwade4
closed
3 years ago
2
General Sequence of Events
#3
kwade4
closed
3 years ago
0
Look into performance of individual recombination methods
#2
kwade4
closed
3 years ago
1
Locate open-source packages for RDP4 dependencies
#1
ArtPoon
closed
3 years ago
4
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