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Porthmeus
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MeMoMe
Metabolic Model Merging - a semiautomated way to merge genome scale metabolic models
Apache License 2.0
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Daf/bulk annotate vmh
#117
DafniGi
closed
6 months ago
0
IF https://github.com/Porthmeus/MeMoMe/pull/89 gets merged we have to add a parameter to the main program that enables/disables the output_names stuff
#116
Unaimend
closed
4 months ago
0
Untestable function in MeMoModel
#115
Porthmeus
opened
6 months ago
2
Weird results when merging recon
#114
Unaimend
opened
6 months ago
5
Thomas/feature/110
#113
Unaimend
closed
5 months ago
2
Use Formulars?
#112
Unaimend
closed
6 months ago
0
Fix compartment removal
#111
Unaimend
closed
4 months ago
1
Report name on name match
#110
Unaimend
closed
4 months ago
1
Report common databases for match ob db
#109
Unaimend
closed
5 months ago
1
Properly implement 1toMany matching or the prevention of it
#108
Unaimend
closed
6 months ago
4
Report metabolites that do not have a match somehwere
#107
Unaimend
closed
6 months ago
1
What are gapseq cpds (example cpd90014)
#106
Unaimend
closed
6 months ago
2
Thomas/feature/8
#105
Unaimend
closed
4 months ago
5
Handle the except statement
#104
Unaimend
closed
4 months ago
2
Handle identifiers file not found
#103
Unaimend
opened
6 months ago
4
Figure out how advantageous it would be to annotate with multiple_id databases and if we can't prevent ambigous/wrong assignment
#102
Unaimend
opened
6 months ago
0
Fix warning in origin databases
#101
Unaimend
closed
4 months ago
1
Thomas/feature/81
#100
Unaimend
closed
4 weeks ago
6
Non descriptive exception handling in MeMoModel
#99
Unaimend
opened
6 months ago
0
Implemented parallel download of databases
#98
Unaimend
closed
6 months ago
0
Implements parallel downlod of databases
#97
Unaimend
closed
6 months ago
0
Logger currently not used when running tests
#96
Unaimend
opened
6 months ago
0
Speed up download by using async
#95
Unaimend
closed
6 months ago
1
Ste flor/tiny model creator
#94
SteFlor
closed
6 months ago
0
Added more tests
#93
Unaimend
closed
6 months ago
1
Thomas/fix/88cp
#92
Unaimend
closed
6 months ago
0
Thomas/fix/90
#91
Unaimend
closed
6 months ago
1
Jan/bulk annotate bi gg
#90
Porthmeus
closed
6 months ago
5
Added output feature to the main script
#89
Unaimend
closed
6 months ago
2
Model matching takes quite long
#88
Unaimend
closed
6 months ago
4
findOptimalInchi Error
#87
Unaimend
closed
6 months ago
6
RDKIT Error
#86
Unaimend
closed
4 months ago
6
Thomas/feature/79
#85
Unaimend
closed
7 months ago
0
Annotate ChEBI crosslinks
#84
Porthmeus
opened
7 months ago
0
test_MeMoModel.test_annotateChEBI is throwing warnings, where it shouldn't
#83
Porthmeus
closed
6 months ago
1
Adjust method return for annotateVMH
#82
Unaimend
closed
6 months ago
2
Determine a timepoint when we stop annotating/"recursive" buld annotation
#81
Unaimend
closed
1 month ago
0
Db_path/config unbound
#80
Unaimend
closed
6 months ago
3
Collect model merge performace statistics
#79
Unaimend
closed
6 months ago
2
Implement an automatic pKa/pKb calculation from the structure
#78
Porthmeus
opened
8 months ago
0
Update main.yml
#77
Unaimend
closed
8 months ago
0
Update requirements.yml
#76
Unaimend
closed
8 months ago
0
Increase the metabolite matching part by parallelizing the search process
#75
Porthmeus
opened
8 months ago
1
Reorganization of the Database downloading and the fixing #63
#74
Porthmeus
closed
8 months ago
4
Jan/feature#59
#73
Porthmeus
closed
9 months ago
0
Rewrite the metabolite matching
#72
Porthmeus
closed
1 month ago
1
Populate the cobrapy_model slot in MeMoModels regardless of loading method
#71
Porthmeus
closed
9 months ago
1
Handling reactions which use duplicated metabolites within one model
#70
Porthmeus
closed
1 month ago
2
Create a main script
#69
Porthmeus
opened
10 months ago
4
Fix cache Issue
#68
Unaimend
closed
7 months ago
0
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