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Psy-Fer
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SquiggleKit
SquiggleKit: A toolkit for manipulating nanopore signal data
MIT License
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Running into issues with SquigglePlot.py using fast5 files converted from pod5
#65
yinyuanmtu
closed
5 months ago
6
SquigglePlot command is not working
#64
TTT16
opened
6 months ago
6
Estimate length of long homopolymers in DNA
#63
dweemx
opened
8 months ago
5
ImportError: Cannot load backend 'TkAgg' which requires the 'tk' interactive framework, as 'headless' is currently running
#62
vetmohit89
opened
1 year ago
1
ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all()
#61
vetmohit89
opened
1 year ago
4
adding stripped out dtw from mlpy - not tested, only hack
#60
hasindu2008
opened
1 year ago
0
no filenames list built
#59
Qvdauwer
opened
2 years ago
5
unable to plot individual .fast5 after installing vbz plugin
#58
emmarl25
opened
2 years ago
3
Scrappie replacement
#57
sirselim
opened
2 years ago
0
scrappie fasta Illegal instruction
#56
chilampoon
closed
1 year ago
0
Fast5_fetcher_multi.py no output
#55
Salvobioinfo
opened
2 years ago
2
Plotting specific readID from slow5 or blow5 file can take a long time
#54
waltergallegog
closed
2 years ago
4
SquigglePlot.py with -n 20 option produces more than one plot
#53
waltergallegog
closed
2 years ago
3
Error with hdf5 plug in
#52
miles-jon
closed
2 years ago
9
Error plotting with SquigglePlot.py
#51
capoony
opened
2 years ago
8
Job is in D state for a long time
#50
kaltinel
opened
3 years ago
10
Added the updated content from other repo
#49
AlyneG
closed
3 years ago
0
Issue about MotifSeq.py.
#48
Goatofmountain
opened
3 years ago
1
squigglepull scale and pA_convert functions does not work with multifast5 files
#47
Akanksha2511
closed
3 years ago
8
demultiplexing fast5
#46
aspitaleri
opened
3 years ago
19
SquigglePull - KeyError: 'Unable to open object (component not found)'
#45
asttra
opened
3 years ago
2
Using MotifSeq coordinates within single reads to segment fast5 file at those positions.
#44
gallardo-seq
opened
3 years ago
5
output files made by SquigglePull.py containing nothing
#43
liu-pinnng
opened
3 years ago
12
Issue visualizing squiggles with recent fast5 file
#42
mriekje
opened
3 years ago
3
Issue with h5py
#41
XPHenry
closed
3 years ago
3
dRNA_segmenter read_dic
#40
smaegol
closed
3 years ago
2
Dynamic seq_sum columns selection
#39
noncodo
closed
4 years ago
1
Exclude list rather than include
#38
Psy-Fer
closed
4 years ago
1
Python3 SquiggleKit
#37
XPHenry
closed
4 years ago
2
SquiggleKit can be used for extract raw current signal in specific position of read?
#36
weir12
opened
4 years ago
3
SquigglePlot.py does not result in anything
#35
sem0036
opened
4 years ago
13
Using RNA for MotifSeq
#34
epi-gene
opened
4 years ago
9
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x89 in position 0: invalid start byte
#33
harisankarsadasivan
closed
3 years ago
2
MotifSeq output all hits
#32
mattdmem
opened
4 years ago
1
SquigglePlot.py cannot open imported single fast5 file
#31
defectsnow
closed
4 years ago
5
Add plotting squiggle for a single read from a single multi-fast5 file
#30
nickschurch
closed
4 years ago
1
SquigglePlot.py fails for single read from a single multi-fast5 file
#29
nickschurch
closed
4 years ago
2
Trouble Installing MLPY
#28
defectsnow
closed
4 years ago
10
Fast5_fetcher hanging on 'extracting' stage
#27
dn-ra
closed
4 years ago
16
MotifSeq read error
#26
obehrto
opened
4 years ago
3
MotifSeq seg faulting at read_bait_model
#25
690645258
closed
4 years ago
3
SquigglePull: KeyError: 'Unable to open object (component not found)' help
#24
690645258
closed
4 years ago
5
dRNA SquiggleKit
#23
pabloacera
closed
4 years ago
3
SquigglePull command does not print help
#22
splaisan
closed
5 years ago
3
degenerated bases & scrappie squiggle
#21
splaisan
closed
5 years ago
7
What does the scaled_mad mean?
#20
youyupei
closed
5 years ago
4
Error when using fast5_fetcher.py
#19
pterzian
closed
4 years ago
11
Overlaying raw signal of particular target
#18
callumparr
closed
5 years ago
2
Erreur de segmentation (core dumped)
#17
DelphIONe
closed
4 years ago
10
Cannot import dtw_subsequence from mlpy
#16
shaniAmare
closed
5 years ago
19
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