Psy-Fer interARTIC issues

Psy-Fer / interARTIC

InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..

https://psy-fer.github.io/interARTIC/

MIT License

29 stars 7 forks source link

issues

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fix links because aarnet closed the cloudstor

#76 hasindu2008 closed 9 months ago
0
Command Failed: bcftools

#75 yeathian opened 2 years ago
6
FR: protein variants

#74 Psy-Fer opened 2 years ago
0
bed_file referenced before assignment

#73 Psy-Fer opened 2 years ago
1
sceheme download failed error in artic minion

#72 Psy-Fer closed 2 years ago
1
bed format error when testing on amplicon & ref on other viruses

#71 Krysasp closed 2 years ago
2
Add option for min_depth

#70 omarkr8 opened 2 years ago
1
Gupplyplex. illegal instruction, core dump

#69 omarkr8 opened 2 years ago
18
run wont start. output is in same directory as data

#68 omarkr8 opened 2 years ago
12
Add barcode autodetect

#67 Psy-Fer opened 3 years ago
0
Nanopolish and 96 barcodes

#66 Psy-Fer opened 3 years ago
0
RB##.fastq not found error

#65 Psy-Fer opened 3 years ago
0
macOS library's missing?

#64 Psy-Fer closed 3 years ago
2
fix input for single sample when compiling metadata for QC report

#63 Psy-Fer closed 3 years ago
3
QC metric download buttons

#62 Psy-Fer closed 3 years ago
2
delete and abort buttons on home no longer working

#61 Psy-Fer opened 3 years ago
1
More QC metrics on output

#60 Psy-Fer closed 3 years ago
4
Can the abort button be hiddenor show something in green like success after all steps complete?

#59 hasindu2008 closed 3 years ago
3
Missing jobs until manually refreshed

#58 hasindu2008 opened 3 years ago
1
Progress bar needs to be fixed

#57 Psy-Fer opened 3 years ago
0
Add artic v4 primers

#56 Psy-Fer closed 3 years ago
3
utf-8 compatibility

#55 Psy-Fer closed 3 years ago
3
how to update?

#54 Psy-Fer closed 3 years ago
1
Step by step guide for custom schemes

#53 Psy-Fer closed 3 years ago
0
Add html docs pages to app

#52 Psy-Fer closed 3 years ago
4
Add version info to web interface

#51 Psy-Fer closed 3 years ago
6
config file for custom schemes

#50 Psy-Fer opened 3 years ago
0
Matplotlib issue

#49 hasindu2008 closed 3 years ago
3
interARTIC for aarch64 (Jetson Xavier NX)

#48 hanfan1803 closed 3 years ago
47
Problems with Fastq files in Subfolder

#47 AntonPembaur closed 3 years ago
7
Output directory check enchancement to detects wrong FASTQ inference

#46 hasindu2008 opened 3 years ago
0
Button for "next" and "download all"

#45 hasindu2008 closed 3 years ago
5
fasta download button

#44 Psy-Fer closed 3 years ago
1
Custom primer bug with primer type == None

#43 Psy-Fer closed 3 years ago
1
Custom primer scheme name

#42 Psy-Fer closed 3 years ago
1
After a job failed, rerunning option gives error

#41 hasindu2008 closed 3 years ago
1
FASTQ file location inferrence is wrong

#40 hasindu2008 closed 3 years ago
3
Nanopolish pipeline does not work if sequencing summary file is not there

#39 hasindu2008 closed 3 years ago
1
Need to document (add tooltip) about the data directory structure

#38 hasindu2008 closed 3 years ago
2
SIngle sample no longer works

#37 hasindu2008 closed 3 years ago
0
When a error occurs, the job list on the home page becomes empty

#36 hasindu2008 opened 3 years ago
0
Barcode format check in CSV

#35 hasindu2008 closed 3 years ago
0
Fix issues in run.sh scripts when the path contains spaces

#34 hasindu2008 closed 3 years ago
0
Video tutorial/demo

#33 Psy-Fer closed 3 years ago
1
Add model selection for medaka to allow use with promethion flowcells

#32 Psy-Fer opened 3 years ago
0
Cleanup static/tmp_plots

#31 Psy-Fer closed 3 years ago
0
A clear error message if the user has not set the input data locations

#30 hasindu2008 closed 3 years ago
1
Update about page

#29 Psy-Fer closed 3 years ago
0
Re-organise output page

#28 Psy-Fer closed 3 years ago
2
Add plots to output page

#27 Psy-Fer closed 3 years ago
1