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PyEED
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pyeed
🧬 Toolkit to create, annotate, and analyze specialized sequence databases
https://pyeed.github.io/pyeed/
MIT License
3
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Fix mature protein Idea from Max and implement start and end clean
#101
NiklasAbraham
opened
4 hours ago
0
Add features for mutation detection in DNA and Proteins
#100
NiklasAbraham
opened
4 hours ago
1
Add MMseqs2 add the docker back in pyeed
#99
NiklasAbraham
opened
4 hours ago
0
Fix BlastP und BlastN add the docker
#98
NiklasAbraham
opened
4 hours ago
0
OWL File including and loading in DB
#97
NiklasAbraham
opened
4 hours ago
1
Primary adapter ncbi
#96
haeussma
opened
2 weeks ago
0
Clean stuff
#95
haeussma
closed
2 weeks ago
0
added implementation to calculate embeddings
#94
haeussma
closed
3 weeks ago
0
Embeddings esm
#93
haeussma
closed
3 weeks ago
0
Implement plotly
#92
haeussma
closed
2 months ago
0
added saving option for alaina
#91
NiklasAbraham
closed
2 months ago
0
Dna fetcher
#90
NiklasAbraham
closed
2 months ago
0
Sequence network features
#89
NiklasAbraham
closed
2 months ago
0
improve connection handling for clustalo container
#88
panzertm
closed
4 months ago
0
86 wrong attribute type in msa
#87
haeussma
closed
4 months ago
0
Wrong attribute type in `MSA`
#86
haeussma
closed
4 months ago
0
Dev
#85
haeussma
closed
5 months ago
0
Fix organism error
#84
haeussma
closed
5 months ago
0
Dev
#83
haeussma
closed
5 months ago
0
Home page of docs references wrong DM
#82
haeussma
closed
4 hours ago
0
Delete .DS_Store
#81
haeussma
closed
5 months ago
0
fixed alignment and blast search
#80
haeussma
closed
5 months ago
0
updated test
#79
haeussma
closed
5 months ago
0
Ontology dm, docs in network.ipynb
#78
NiklasAbraham
closed
5 months ago
1
Ontology dm- Added Examples Monday
#77
NiklasAbraham
closed
5 months ago
0
Clean examples
#76
haeussma
closed
6 months ago
0
Clustal api
#75
haeussma
closed
6 months ago
0
Docker stable network
#74
NiklasAbraham
closed
6 months ago
0
Fix basics
#73
haeussma
closed
6 months ago
0
Add examples
#72
haeussma
closed
6 months ago
0
Add examples
#71
haeussma
closed
6 months ago
0
Refactor sequence alignment #63
#70
alacheim
closed
6 months ago
0
Refactor sequence alignment #63
#69
alacheim
closed
6 months ago
0
Fix circular import for `ProteinRecord`
#68
JR-1991
closed
6 months ago
1
Refactor `ProteinRecord` #55
#67
haeussma
closed
6 months ago
0
62 refactor mappers of fetcher modules
#66
haeussma
closed
6 months ago
0
refactor pyeed docker image
#65
haeussma
closed
4 hours ago
0
refactor clustering routine
#64
haeussma
closed
4 hours ago
0
refactor sequence alignment routine
#63
haeussma
closed
6 months ago
0
Refactor mappers of fetcher modules
#62
haeussma
closed
2 months ago
0
refactor `SequenceNetwork`
#61
haeussma
closed
6 months ago
1
test new `sdrdm-db` version
#60
haeussma
closed
2 months ago
1
add `fasta_string` and `fasta` method to `SequenceRecord`
#59
haeussma
closed
6 months ago
1
Data model refactor, enabling ontology support
#58
haeussma
closed
5 months ago
2
Cytoscape network implementation
#57
NiklasAbraham
closed
6 months ago
0
Hmm
#56
haeussma
closed
6 months ago
1
Refactor `SequenceNetwork`
#55
haeussma
closed
2 months ago
1
Calculated identity is > 1 in pairwise alignment
#54
haeussma
closed
6 months ago
0
Parallelize Network creation
#53
haeussma
closed
6 months ago
0
Add tools such as SoluProt, FireProt, and HotSpotWizard
#52
haeussma
opened
7 months ago
0
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