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PyProphet
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pyprophet
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
http://www.openswath.org
BSD 3-Clause "New" or "Revised" License
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singularity pull issue
#125
HFan11
opened
6 days ago
6
pip install fails claiming that numpy is not installed
#124
kometkamerat
opened
2 months ago
3
Feature/split
#123
singjc
opened
5 months ago
0
[ADD] peptide sequence specific filtering for sqMass and OSW filtering
#122
singjc
opened
8 months ago
0
[FIX] deprecation warning with pandas
#121
jcharkow
closed
8 months ago
0
Metabolomics - Global Context
#120
bruadi
opened
11 months ago
0
sqlite3.OperationalError:database is locked
#119
yuz2011
opened
1 year ago
3
Fix broken osw tests and report/deprecation warnings
#118
singjc
closed
8 months ago
0
[FEATURE] add feature names to xgboost output
#117
jcharkow
opened
1 year ago
0
AssertionError: Column group_id is not in input file(s).
#116
ajsweatt
opened
1 year ago
1
Fix/ipf np int
#115
singjc
closed
1 year ago
0
Update/main score selection
#114
singjc
closed
1 year ago
0
Fix/apply weights
#113
singjc
closed
1 year ago
0
[FIX] PyPDF2 3.0.0 deprecation of PdfFileMerger, PdfFileReader to Pdf…
#112
singjc
closed
1 year ago
0
Parquet Export
#111
jcharkow
opened
1 year ago
1
Feature/dynamic main score
#110
singjc
closed
1 year ago
1
[MINOR] Docker file end bind mount point
#109
singjc
closed
1 year ago
0
Feature/filter osw
#108
singjc
closed
1 year ago
0
[MINOR] Add exception handling for when applying weights and not spec…
#107
singjc
closed
1 year ago
1
Exception handling when applying weights
#106
singjc
closed
1 year ago
1
sqlite3.OperationalError: no such table: PYPROPHET_WEIGHTS
#105
yachliu
closed
1 year ago
2
How can I calculate the sub score?
#104
doodleryul
closed
2 years ago
2
[ADD] Add pi0estimation extended error help into separate PR from PR …
#103
singjc
closed
2 years ago
0
[FEATURE] Separate color blind friendly feature into separate PR from …
#102
singjc
closed
2 years ago
0
Fix IPF Export with Unimod to Codename Table
#101
singjc
closed
1 year ago
2
Allow for color adjustment of the automatically generated target decoy plots
#100
Matthias313
opened
2 years ago
0
nearly identical pep/qvalue distribution for target and decoy but with bimodal distribution on score
#99
kairenchen721
closed
2 years ago
7
sqlite3.Integrity Error
#98
fangfeiz
closed
2 years ago
17
error of using pyprophet-cli
#97
Hitlikegh
closed
3 years ago
2
Remove m_score filtering?
#96
patruong
closed
3 years ago
1
[FIX] Cython in setup.py / Include PYX
#95
grosenberger
closed
3 years ago
0
Fix/cython
#94
grosenberger
closed
3 years ago
0
[RELEASE] PyProphet 2.1.8
#93
grosenberger
closed
3 years ago
0
_optimize.pyx missing from tarball on pypi
#92
dpryan79
closed
3 years ago
2
[FIX] Cython build in setup.py
#91
grosenberger
closed
3 years ago
0
[FIX] Report only targets in overview report
#90
grosenberger
closed
3 years ago
0
Decoys peptides are counted in pyprophet statistics
#89
jcharkow
closed
3 years ago
2
pyprophet ipf error
#88
summerghw
closed
3 years ago
3
ADD: export before scoring with MS1MS2 scores
#87
oliveralka
closed
1 year ago
0
Issue Module Import py.test
#86
oliveralka
opened
3 years ago
0
merge step fails with `sqlite3.OperationalError: table FEATURE has 3 columns but 9 values were supplied`
#85
cbielow
closed
3 years ago
2
OpenSWATH IPF workflow errored.
#84
andyzim111
closed
3 years ago
2
[ADD] ScoreFilter
#83
oliveralka
closed
4 years ago
4
Feature/merged subsampling
#82
singjc
closed
4 years ago
1
[FIX] Minor patches & Release 2.1.5
#81
grosenberger
closed
4 years ago
0
[FEATURE] IPF reading speedup & first version of statistics report
#80
grosenberger
closed
4 years ago
0
Revert "Export compounds scored on ms1 level (SCORE_MS1)"
#79
grosenberger
closed
4 years ago
0
pi0 in legacy code
#78
mantouRobot
closed
4 years ago
2
Error: At least 10 decoy groups and 10 target groups are required
#77
lmangnier
closed
4 years ago
4
[RELEASE] Version 2.1.4
#76
grosenberger
closed
4 years ago
0
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