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PyProphet
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pyprophet
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
http://www.openswath.org
BSD 3-Clause "New" or "Revised" License
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Export compounds scored on ms1 level (SCORE_MS1)
#75
oliveralka
closed
4 years ago
7
Note: Installing xgboost on MacOS Catalina 10.15 (pyprophet)
#74
oliveralka
closed
4 years ago
1
Assay RT calculation is not proper
#73
shubham1637
opened
4 years ago
7
Merging across different libraries
#72
hroest
opened
4 years ago
0
Question about calculating scores based the LDA scalings_
#71
mantouRobot
closed
4 years ago
6
ImportError: cannot import name 'factorial'
#70
fangfeiz
closed
3 years ago
0
[FIX] Reduced merging patch
#69
grosenberger
closed
4 years ago
0
[FEATURE] Speedup for merging
#68
grosenberger
closed
4 years ago
0
[FIX] Updated regression tests for dependencies
#67
grosenberger
closed
4 years ago
0
[FIX] merge osw with compounds
#66
oliveralka
closed
4 years ago
1
pyprophet export ends w/o any output
#65
mwalzer
closed
4 years ago
4
[FEATURE] allow gene-level scoring
#64
hroest
closed
4 years ago
1
struct.error: 'i' format requires -2147483648 <= number <= 2147483647
#63
Allen188
closed
3 years ago
3
[FEAUTRE] Pretrained scoring
#62
grosenberger
closed
5 years ago
0
[FEATURE] New scores for transition numbers, precursor & product charge
#61
grosenberger
closed
5 years ago
0
[FIX] Second fix
#60
grosenberger
closed
5 years ago
0
[FIX] Export
#59
grosenberger
closed
5 years ago
0
[FEATURE] Docker container based on official Python release
#58
grosenberger
closed
5 years ago
0
[FIX] Better warnings & end of Python 2 support
#57
grosenberger
closed
5 years ago
0
Error message: Missing SCORE_MS2 table
#56
hroest
closed
3 years ago
1
[FIX] Click-based exception management
#55
grosenberger
closed
5 years ago
0
SVD does not converge
#54
Leon-Bichmann
closed
5 years ago
6
[RELEASE] 2.1.0
#53
grosenberger
closed
5 years ago
0
[ADD] export function for compounds
#52
oliveralka
closed
5 years ago
5
[TEST] also test Python 3.7
#51
hroest
closed
5 years ago
1
[FEATURE] merge same run
#50
hroest
closed
5 years ago
2
pyprophet export ignores --out parameter
#49
hroest
closed
3 years ago
2
Transition ids are not preserved
#48
hroest
closed
3 years ago
2
[FEATURE] XGBoost-based classifier
#47
grosenberger
closed
5 years ago
0
create_table_fmt is incorrect in backpropagate_osw
#46
bretttully
closed
5 years ago
1
Fix bug where SCORE_PROTEIN has a PEPTIDE_ID column.
#45
rohan-shah
closed
5 years ago
1
[FIX] Fix multiprocessing dependency
#44
grosenberger
closed
5 years ago
0
"pyprophet score --threads=-1 ... "raise exception
#43
tachengxmu
closed
5 years ago
1
[FIX] Backpropagation of peptide- or protein-only scores, part 2
#42
grosenberger
closed
5 years ago
1
[FIX] Replace lfdr scipy interpolation function with FITPACK
#41
grosenberger
closed
5 years ago
4
[FIX] Backpropagation of peptide- or protein-only scores.
#40
grosenberger
closed
5 years ago
2
Back propagate fails if 'SCORE_PROTEIN' isn't in apply_scores
#39
bretttully
closed
5 years ago
5
Pyprophet protein error
#38
sian231
closed
5 years ago
13
[FEATURE] Faster subsampling & merging
#37
grosenberger
closed
5 years ago
0
[RELEASE] 2.0.1
#36
grosenberger
closed
5 years ago
0
[FIX] Cython rebuild
#35
grosenberger
closed
5 years ago
0
[RELEASE] 2.0.0
#34
grosenberger
closed
5 years ago
0
PATH issuse with pyprophet
#33
sjr24
closed
5 years ago
8
[FIX] Improved selection of main score
#32
grosenberger
closed
5 years ago
0
Swath2stat analysis
#31
mchiapello
opened
5 years ago
3
[FEATURE] Export: Augmented IPF mode and sparse transition quantification
#30
grosenberger
closed
5 years ago
0
[FIX] Ensure that MS2 scoring was conducted before inference
#29
grosenberger
closed
5 years ago
0
Export: Improved compatibility with downstream processing tools
#28
grosenberger
closed
5 years ago
0
[FEATURE] Integrated MS1 & MS2 scoring
#27
grosenberger
closed
6 years ago
0
[FIX] priors
#26
grosenberger
closed
6 years ago
0
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