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RGLab
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Tools and methods for analysis of single cell assay data in R
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Add torture test for glm convergence
#41
amcdavid
closed
9 years ago
1
enable support for limma-like contrasts
#40
gfinak
closed
10 years ago
4
Any chance of an example for RNA-seq counts?
#39
JohnReid
closed
9 years ago
4
Error message from filter
#38
JohnReid
closed
9 years ago
3
Ebayes shrinkage not working in master (and needs test coverage)
#37
amcdavid
closed
9 years ago
1
devel branch not passing tests, cannot document with roxygen etc
#36
gfinak
closed
10 years ago
5
Can't build devel branch
#35
gfinak
closed
10 years ago
2
install_github fails due to vignette compilation error
#34
esimonds
closed
10 years ago
3
Current master branch is not passing tests and examples fail to run
#33
gfinak
closed
10 years ago
4
glmer is still broken in test.zlm
#32
amcdavid
closed
10 years ago
3
Availability on Mac?
#31
brucetony
closed
11 years ago
6
lme4 > .999 breaks car::lht
#30
amcdavid
closed
11 years ago
5
2b597eb fails tests
#29
amcdavid
closed
11 years ago
6
Plotting methods/class encapsulation for thresholdNanoString
#28
amcdavid
closed
11 years ago
0
Better validity checking for combine methods
#27
amcdavid
closed
8 years ago
2
add a cData()<- method
#26
gfinak
closed
11 years ago
3
Do not silently coerce indexes
#25
amcdavid
closed
11 years ago
0
Test failures
#24
gfinak
closed
11 years ago
3
getConcordance/burdenOfFiltering is slow
#23
amcdavid
closed
11 years ago
6
Clean up creation of mandatory fields in SingleCellAssay objects and derived
#22
amcdavid
closed
11 years ago
1
building vignette errors out
#21
amcdavid
closed
11 years ago
3
LRT also affected by migration to data.table?
#20
fgwinner
closed
11 years ago
1
Split is still broken for SingleCellAssay
#19
gfinak
closed
11 years ago
5
Filtering genes by boolean vector in SingleCellAssay is broken
#18
gfinak
closed
11 years ago
1
SingleCellAssay constructor fails depending on ordering of rows in data.frame
#17
fgwinner
closed
11 years ago
2
Treatment of NAs
#16
amcdavid
opened
11 years ago
1
getConcordance on FluidigmAssay errors out
#15
fgwinner
closed
11 years ago
6
Slight change in NanostringAssay construction arguments causes everything to explode
#14
amcdavid
closed
11 years ago
0
Melt shadowed if reshape loaded after SingleCellAssay
#13
amcdavid
closed
11 years ago
0
rename the wellKey to a concatenation of idvars when returning to the user
#12
gfinak
closed
11 years ago
0
make reading NanoString data faster
#11
gfinak
closed
8 years ago
12
combine error on NanostringAssay
#10
gfinak
closed
11 years ago
1
Clean up the getMapping interface
#9
gfinak
closed
11 years ago
1
Ensure primerids are sorted the same way in each idvars subgroup.
#8
gfinak
closed
11 years ago
2
NanoStringAssay class constructor fails on exprs() when geneid is not unique
#7
gfinak
closed
11 years ago
13
threshold (Nanostring)
#6
amcdavid
closed
11 years ago
2
Construct a FluidigmAssay from raw NanoString data
#5
gfinak
closed
11 years ago
7
Readers for NanoString lanes
#4
gfinak
closed
11 years ago
0
Filtering returns wellKey labelled logical vector
#3
gfinak
closed
11 years ago
0
filter with apply_filter=TRUE and filt_control(filter=FALSE) errors out
#2
gfinak
closed
11 years ago
0
Combine dispatch problems
#1
amcdavid
closed
11 years ago
7
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