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RIVM-bioinformatics
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AmpliGone
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
https://rivm-bioinformatics.github.io/AmpliGone/
GNU Affero General Public License v3.0
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Some questions regarding 16s rRNA primers
#79
Thomieh73
opened
1 month ago
1
version 2.0.0
#78
florianzwagemaker
opened
2 months ago
1
chore: sync main to dev
#77
github-actions[bot]
closed
3 months ago
1
chore(main): release 1.3.1
#76
ids-bioinformatics
closed
3 months ago
1
Add optional arguments to manually set alignment preset and alignment scoring-matrix
#75
florianzwagemaker
closed
4 months ago
1
chore: sync main to dev
#74
github-actions[bot]
closed
11 months ago
0
chore(main): release 1.3.0
#73
ids-bioinformatics
closed
11 months ago
1
Use reference-specific primer coordinates
#72
florianzwagemaker
closed
11 months ago
0
multi-ref support
#71
florianzwagemaker
closed
11 months ago
0
support for multi-fasta reference input
#70
florianzwagemaker
closed
1 year ago
0
Support for multiple sequences in the input reference FASTA file
#69
BertBog
closed
11 months ago
4
chore: sync main to dev
#68
github-actions[bot]
closed
1 year ago
0
chore(main): release 1.2.1
#67
ids-bioinformatics
closed
1 year ago
1
Extension checking
#66
KHajji
closed
1 year ago
0
chore: sync main to dev
#65
github-actions[bot]
closed
1 year ago
0
chore(main): release 1.2.0
#64
ids-bioinformatics
closed
1 year ago
1
Add fragmented amplicon-type removal method
#63
florianzwagemaker
closed
1 year ago
0
add fragmented amplicon type
#62
florianzwagemaker
closed
1 year ago
0
chore: sync main to dev
#61
github-actions[bot]
closed
1 year ago
0
chore: release 1.1.0
#60
ids-bioinformatics
closed
1 year ago
1
Addition the new logging method and fix spacing/margins for argparse help doc
#59
florianzwagemaker
closed
1 year ago
0
chore: sync main to dev
#58
github-actions[bot]
closed
2 years ago
0
chore: release 1.0.3
#57
ids-bioinformatics
closed
2 years ago
1
chore: sync main to dev
#56
github-actions[bot]
closed
2 years ago
0
chore: release 1.0.2
#55
github-actions[bot]
closed
2 years ago
1
Fix reverse-primer cutting process one nucleotide too short + ci updates
#54
florianzwagemaker
closed
2 years ago
0
chore: sync main to dev
#53
github-actions[bot]
closed
2 years ago
0
chore: release 1.0.1
#52
github-actions[bot]
closed
2 years ago
1
chore: sync main to dev
#51
github-actions[bot]
closed
2 years ago
0
chore: release 1.0.0
#50
github-actions[bot]
closed
2 years ago
1
AmpliGone release 1.0.0 with BED support and improved error-rate primer search
#49
florianzwagemaker
closed
2 years ago
0
Addition of docstrings
#48
florianzwagemaker
closed
2 years ago
0
BED support
#47
KHajji
closed
2 years ago
0
chore: sync main to dev
#46
github-actions[bot]
closed
2 years ago
0
chore: release 0.4.3
#45
github-actions[bot]
closed
2 years ago
1
remove unnecessary print statement and update docs
#44
florianzwagemaker
closed
2 years ago
0
chore: sync main to dev
#43
github-actions[bot]
closed
2 years ago
0
chore: release 0.4.2
#42
github-actions[bot]
closed
2 years ago
1
allow user-defined primer error rate
#41
florianzwagemaker
closed
2 years ago
0
chore: sync main to dev
#40
github-actions[bot]
closed
2 years ago
0
chore: release 0.4.1
#39
github-actions[bot]
closed
2 years ago
1
fix duplications in the removed primers overview
#38
florianzwagemaker
closed
2 years ago
0
chore: sync main to dev
#37
github-actions[bot]
closed
2 years ago
0
chore: release 0.4.0
#36
github-actions[bot]
closed
2 years ago
1
improve consistency on read-ends and find primer coordinates with up to 3 mismatches
#35
florianzwagemaker
closed
2 years ago
0
Tail pr removals
#34
florianzwagemaker
closed
2 years ago
0
Mismatch primer search
#33
florianzwagemaker
closed
2 years ago
0
chore: sync main to dev
#32
github-actions[bot]
closed
2 years ago
0
chore: release 0.3.3
#31
github-actions[bot]
closed
2 years ago
1
fix support for end-to-mid mode and fix sampling crash with small input size
#30
florianzwagemaker
closed
2 years ago
0
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