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RIVM-bioinformatics
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AmpliGone
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
https://rivm-bioinformatics.github.io/AmpliGone/
GNU Affero General Public License v3.0
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Tail pr removals
#34
florianzwagemaker
closed
2 years ago
0
Mismatch primer search
#33
florianzwagemaker
closed
2 years ago
0
chore: sync main to dev
#32
github-actions[bot]
closed
2 years ago
0
chore: release 0.3.3
#31
github-actions[bot]
closed
2 years ago
1
fix support for end-to-mid mode and fix sampling crash with small input size
#30
florianzwagemaker
closed
2 years ago
0
chore: sync main to dev
#29
github-actions[bot]
closed
3 years ago
0
chore: release 0.3.2
#28
github-actions[bot]
closed
3 years ago
1
fix exported coordinates
#27
florianzwagemaker
closed
3 years ago
0
chore: sync main to dev
#26
github-actions[bot]
closed
3 years ago
0
chore: release 0.3.1
#25
github-actions[bot]
closed
3 years ago
1
account for softclips and custom scoring params
#24
florianzwagemaker
closed
3 years ago
0
chore: sync main to dev
#23
github-actions[bot]
closed
3 years ago
0
chore: release 0.3.0
#22
github-actions[bot]
closed
3 years ago
1
Use CIGAR strings for primer removal process & fast data loading
#21
florianzwagemaker
closed
3 years ago
0
Use CIGAR strings to determine sequence cut position
#20
KHajji
closed
3 years ago
0
Improve data loading speed
#19
florianzwagemaker
closed
3 years ago
0
chore: sync main to dev
#18
github-actions[bot]
closed
3 years ago
0
chore: release 0.2.3
#17
github-actions[bot]
closed
3 years ago
1
set correct exit code for #12
#16
florianzwagemaker
closed
3 years ago
0
chore: sync main to dev
#15
github-actions[bot]
closed
3 years ago
0
chore: release 0.2.2
#14
github-actions[bot]
closed
3 years ago
1
Make sure AmpliGone exits cleanly in various situations
#13
florianzwagemaker
closed
3 years ago
0
Give an option to exit cleanly when empty input is given
#12
florianzwagemaker
closed
3 years ago
0
Exit cleanly when no primer-sequence coordinates are found
#11
florianzwagemaker
closed
3 years ago
0
chore: sync main to dev
#10
github-actions[bot]
closed
3 years ago
0
chore: release 0.2.1
#9
github-actions[bot]
closed
3 years ago
1
add github-actions rules + fix for primer case sensitivity
#8
florianzwagemaker
closed
3 years ago
0
add CI rules to dev branch for future merge
#7
florianzwagemaker
closed
3 years ago
0
Chore: sync main to dev
#6
florianzwagemaker
closed
3 years ago
0
add first version of AmpliGone docs
#5
florianzwagemaker
closed
3 years ago
0
Mixed-case primer input is not supported
#4
florianzwagemaker
closed
3 years ago
1
Output csv file with primers that have been removed
#3
florianzwagemaker
closed
3 years ago
0
Exit gracefully when encountering empty input files
#2
florianzwagemaker
closed
3 years ago
1
Dev
#1
florianzwagemaker
closed
3 years ago
0
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