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RIVM-bioinformatics
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ViroConstrictor
ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
https://rivm-bioinformatics.github.io/ViroConstrictor/
GNU Affero General Public License v3.0
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Post-update input detection is not consistent
#111
florianzwagemaker
opened
3 weeks ago
0
Samplesheet parser crashes if there are empty rows in between data-rows
#110
florianzwagemaker
opened
4 weeks ago
0
refactor: amplicon_covs.py
#109
raaijmag
opened
1 month ago
1
chore: sync main to dev
#108
github-actions[bot]
closed
1 month ago
1
chore(main): release 1.4.6
#107
ids-bioinformatics
closed
1 month ago
2
chore: sync main to dev
#106
github-actions[bot]
closed
2 months ago
1
chore(main): release 1.4.5
#105
ids-bioinformatics
closed
2 months ago
2
Add genbank input file support
#104
florianzwagemaker
opened
2 months ago
0
chore: sync main to dev
#103
github-actions[bot]
closed
2 months ago
1
chore(main): release 1.4.4
#102
ids-bioinformatics
closed
2 months ago
2
Ensure compatibility for conda strict channel priority
#101
florianzwagemaker
closed
2 months ago
1
chore: sync main to dev
#100
github-actions[bot]
closed
4 months ago
1
chore(main): release 1.4.3
#99
ids-bioinformatics
closed
4 months ago
2
validate workflow runs
#98
florianzwagemaker
closed
6 months ago
1
Containerization of workflow
#97
florianzwagemaker
closed
6 months ago
1
ViroConstrictor multi-sequence analysis running error
#96
Chrisxie03
closed
7 months ago
2
chore: sync main to dev
#95
github-actions[bot]
closed
6 months ago
1
chore(main): release 1.4.2
#94
ids-bioinformatics
closed
7 months ago
2
update ampligone and remove --force flag from docs CI workflow
#93
florianzwagemaker
closed
7 months ago
1
chore: sync main to dev
#92
github-actions[bot]
closed
8 months ago
1
chore(main): release 1.4.1
#91
ids-bioinformatics
closed
8 months ago
2
Update AmpliGone & resolve pandas FutureWarning
#90
florianzwagemaker
closed
8 months ago
1
chore: sync main to dev
#89
github-actions[bot]
closed
1 year ago
0
chore(main): release 1.4.0
#88
ids-bioinformatics
closed
1 year ago
1
Addition of the match reference feature set
#87
florianzwagemaker
closed
1 year ago
0
Add the match-ref feature set
#86
florianzwagemaker
closed
1 year ago
0
chore: sync main to dev
#85
github-actions[bot]
closed
1 year ago
0
chore(main): release 1.3.1
#84
ids-bioinformatics
closed
1 year ago
1
Enforce absolute paths in samplesheets and workaround for protobuf error
#83
florianzwagemaker
closed
1 year ago
0
chore: sync main to dev
#82
github-actions[bot]
closed
1 year ago
0
chore(main): release 1.3.0
#81
ids-bioinformatics
closed
1 year ago
1
Use new logging module
#80
florianzwagemaker
closed
1 year ago
0
chore: sync main to dev
#79
github-actions[bot]
closed
1 year ago
0
chore(main): release 1.2.6
#78
ids-bioinformatics
closed
1 year ago
1
fix for hashing issue in newer snakemake versions
#77
florianzwagemaker
closed
1 year ago
0
Refactorings and implementation of custom logging module
#76
florianzwagemaker
closed
1 year ago
0
chore: sync main to dev
#75
github-actions[bot]
closed
1 year ago
0
chore(main): release 1.2.5
#74
ids-bioinformatics
closed
1 year ago
1
Use mamba/conda for updating
#73
florianzwagemaker
closed
1 year ago
0
chore: sync main to dev
#72
github-actions[bot]
closed
1 year ago
0
chore(main): release 1.2.4
#71
ids-bioinformatics
closed
1 year ago
1
Use conda for all dependencies + conda-build compatibility
#70
florianzwagemaker
closed
1 year ago
0
chore: sync main to dev
#69
github-actions[bot]
closed
1 year ago
0
chore(main): release 1.2.3
#68
ids-bioinformatics
closed
1 year ago
1
fix influenza preset for illumina data
#67
florianzwagemaker
closed
1 year ago
0
chore: sync main to dev
#66
github-actions[bot]
closed
1 year ago
0
chore(main): release 1.2.2
#65
ids-bioinformatics
closed
1 year ago
1
quick fix for samplesheets and preset functionality
#64
florianzwagemaker
closed
1 year ago
0
chore: sync main to dev
#63
github-actions[bot]
closed
1 year ago
0
chore(main): release 1.2.1
#62
ids-bioinformatics
closed
1 year ago
1
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