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RWilton
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Arioc
Arioc: GPU-accelerated DNA short-read alignment
BSD 3-Clause "New" or "Revised" License
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AriocE/baseEncode.cpp 1263: buffer capacity exceeded
#35
jarrettrios
closed
1 week ago
3
Disabling softclipping
#34
jarrettrios
opened
2 weeks ago
4
Unable to encode very short reference sequences.
#33
jarrettrios
closed
3 weeks ago
9
Arioc underestimating CpG methylation
#32
jpadesousa
closed
9 months ago
6
Erroneous characters generated in Sam
#31
ZexuanZhao
closed
10 months ago
8
AriocP hangs when aligning WGBS data
#30
RWilton
closed
1 year ago
12
Issues encoding hg38 with AriocE
#29
aedera
closed
1 year ago
4
Error when running AriocP
#28
wabrashear
closed
1 year ago
2
Please provide an example for the creation of a cfg file from a fasta containing multiple sequences with AriocE
#27
claus-h-g
closed
1 year ago
3
AriocP later than AriocP v1.50.3040.21310 (release) +2021-11-06T22:04:41 segfaults when run in Docker
#26
karlkashofer
closed
2 years ago
2
XA Tag
#25
karlkashofer
closed
2 years ago
1
Suppress @SQ metadata header for aggregated FASTA file
#23
RWilton
closed
2 years ago
10
Append fastq comment to SAM output like bwa-mem -C option
#21
karlkashofer
closed
2 years ago
3
Correct way to encode hg38 ?
#20
karlkashofer
closed
2 years ago
6
Mapping accuracy ?
#19
karlkashofer
closed
2 years ago
4
Allow named pipes as input to AriocE
#18
karlkashofer
closed
2 years ago
8
pthread_mutex_unlock returned 22 for AriocE
#17
a7032018
closed
3 years ago
14
Problem with calling methylation marks from AriocP Post aligned sam files
#16
RajneeshSrivastava
closed
3 years ago
1
Does Arioc deal with Fastq.gz files?
#15
RajneeshSrivastava
closed
3 years ago
1
Memory usage requirements for large genomes
#14
andreaswallberg
closed
3 years ago
3
Hard-coded architecture
#13
r-barnes
closed
3 years ago
1
Source code?
#12
r-barnes
closed
3 years ago
3
tuning alignment soft-clipping for variant recall
#11
mdkeehan
closed
3 years ago
2
Please check indel normalisation works appropriately for reverse orientation reads.
#10
mdkeehan
closed
3 years ago
5
software license
#9
RWilton
closed
4 years ago
0
Cuda pinned memory error when switching to 2 GPUs
#8
boconnell89
closed
4 years ago
5
Allocation error
#7
standage
closed
5 years ago
12
Makefile in linux source for powerpc machine could not work correctly
#6
songdongmei
closed
5 years ago
1
Consider putting source code under version control
#5
standage
closed
5 years ago
4
Error with encoding reference genome
#4
standage
closed
5 years ago
11
HOWTO?
#3
dakami
closed
5 years ago
1
Issue while running AriocU and AriocP
#2
xerien
closed
8 years ago
8
No Source Code Available?
#1
bpfeffer
closed
8 years ago
3