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RabadanLab
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arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
GNU General Public License v3.0
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HLA typing for samples with multiple SRRs
#87
OrielResearchCure
opened
2 years ago
0
The result of arcasHLA is not right,why?
#86
thekingofall
opened
2 years ago
0
Is this tool appropriate for DNAseq?
#85
hfl112
opened
2 years ago
0
No output after running `arcasHLA customize`
#84
naity2
opened
2 years ago
0
Bug report for the `run_command` function in `arcas_utilities.py`
#83
naity2
opened
2 years ago
1
Interpretation of HLA LOH results
#82
eseffar
opened
2 years ago
2
Create README.txt
#81
imatrm
closed
2 years ago
0
arcasHLA reference --update error
#80
xunzhaoqianlicao
closed
1 year ago
4
Error in customize function
#79
ttab963
opened
2 years ago
3
Convert to BAM directly while sorting
#78
andreas-wilm
closed
7 months ago
0
Which is default?
#77
yubau1112
closed
2 years ago
1
./arcasHLA reference --update fires an error
#76
OrielResearchCure
closed
2 years ago
4
Small bug fixes for quant.py
#75
fgwinner
closed
2 years ago
1
Git lfs download of reference files failed (git lfs data quota exceeded)
#74
fgwinner
closed
2 years ago
4
Update samtools, bedtools, and kallisto versions
#73
tnken
closed
7 months ago
1
Unable to reproduce test output
#72
tpjones15
closed
2 years ago
2
Extract tool generates duplicate reads, because bedtools bamtofastq generates duplicate reads due to splice mapping or supplementary or secondary alignments
#71
wt2015-github
closed
2 years ago
1
[extract] Error: unable to index bam file.
#70
GaelMoBeau
closed
2 years ago
2
Add the option for user-defined sample id allowing dots
#69
jen-dfci
opened
3 years ago
0
Allow file names with "." in the name
#68
jen-dfci
closed
2 years ago
2
ValueError: not enough values to unpack (expected 4, got 3)
#67
nebilaj
closed
2 years ago
2
639928
#66
nebilaj
closed
3 years ago
0
Version control of IMGT/HLA
#65
wgmao
closed
2 years ago
1
suggestion: B2M expression levels/SNPs
#64
EdGreen21
closed
2 years ago
1
Unable to index
#63
srbehera
closed
2 years ago
1
Which reference sequence do you recommend?
#62
slowkow
opened
3 years ago
7
How to get the latest reference?
#61
slowkow
closed
2 years ago
4
DRB4 genotype issue
#60
BenSolomon
closed
1 year ago
2
New tagged version please
#59
kpalin
closed
3 years ago
2
Genotype MHC from other species
#58
yuanfeng719
closed
3 years ago
1
Cannot update reference
#57
zhangz0801
closed
3 years ago
1
Typing of MICA
#56
prmac
closed
3 years ago
1
issue with merge
#55
zuta-osa77
closed
3 years ago
1
interpreting *genes.json output
#54
zuta-osa77
closed
2 years ago
2
error when running docker
#53
eegk
closed
3 years ago
1
Missing reference
#52
eegk
closed
3 years ago
1
Cannot reproduce test case
#51
lkuchenb
closed
3 years ago
4
Create a new release?
#50
holtgrewe
closed
3 years ago
4
Can I use arcasHLA for cancer scRNA-seq data?
#49
levinhein
closed
3 years ago
2
hla.p not found
#48
bethrusnak
closed
3 years ago
2
Single end fix
#47
alexvpickering
closed
3 years ago
0
determination of single-end vs paired-end data
#46
alexvpickering
closed
3 years ago
1
Update README for genotype from original fastqs
#45
alexvpickering
closed
3 years ago
0
add --avg and --std arguments and defaults for kallisto single-end reads
#44
alexvpickering
closed
3 years ago
0
pseudoalign call to analyze_reads not gathering correct info for kallisto
#43
alexvpickering
closed
3 years ago
1
corrupted hla.dat?
#42
warrenlr
closed
4 years ago
1
HLA genome types virome data
#41
warrenlr
closed
3 years ago
1
HLA locus relative abundance
#40
lz711
closed
3 years ago
1
Requirements for arcasHLA
#39
s849
closed
3 years ago
1
Typing of DPA1
#38
tinyheero
closed
4 years ago
1
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