RahmanTeamDevelopment CoverView issues

RahmanTeamDevelopment / CoverView

A coverage and base/mapping quality evaluation tool for panel and whole exome next-generation sequencing

MIT License

4 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Coverview not installed properly

#23 Dhwani-2410 opened 1 year ago
0
Setting the host and port to something different than localhost:5000

#22 A97paupic opened 4 years ago
0
ERROR: pytest-cov 2.7.1 has requirement pytest>=3.6, but you'll have pytest 3.0.7 which is incompatible.

#21 wentgithub opened 5 years ago
2
install.sh compilation error

#20 mglgc opened 5 years ago
0
CoverView counts unmapped reads differently to old version

#19 andyrimmer opened 7 years ago
1
Validate JSON configuration options

#18 andyrimmer closed 7 years ago
2
Reads Array Does Not Handle Unmapped Reads Correctly

#17 andyrimmer opened 7 years ago
0
Validate Configuration Input File

#16 andyrimmer closed 7 years ago
1
doc/ directory for documentation

#15 marton-munz opened 7 years ago
0
coverview script fails when run from any directory except top-level CoverView directory

#14 andyrimmer closed 7 years ago
2
CoverView hangs when loading reads into in-memory buffer

#13 andyrimmer closed 7 years ago
0
CoverView fails when directional coverage output is requested

#12 andyrimmer closed 7 years ago
0
CoverView fails when pass criteria is set in config

#11 andyrimmer closed 7 years ago
0
CoverView gives an error when the GUI output is requested

#10 andyrimmer closed 7 years ago
0
Create sensibly-named scripts for running unit-tests, regression tests, smoke tests etc

#9 andyrimmer opened 7 years ago
0
Add unset PYTHONPATH to all scripts

#8 andyrimmer closed 7 years ago
0
Pysam installed twice

#7 marton-munz closed 7 years ago
0
Control what is included in the distributed version using a MANIFEST file

#6 marton-munz opened 7 years ago
0
Change structure of test/ directory

#5 marton-munz closed 7 years ago
0
Rename configure.sh as install.sh

#4 marton-munz closed 7 years ago
0
Standardise use of chromosome labels in input and output

#3 andyrimmer opened 7 years ago
0
Unset $PYTHONPATH when running CoverView

#2 andyrimmer closed 7 years ago
1
Installation should run in different shells other than bash

#1 marton-munz opened 7 years ago
2