RangeShifter RScore issues

RangeShifter / RScore

RangeShifter's core simulation code

GNU General Public License v3.0

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Population-specific Fst averages to global Fst

#77 TheoPannetier opened 1 month ago
0
The average of single-pop estimates is equal to Weir&Hill's global estimator

#76 TheoPannetier closed 1 month ago
1
Fst for haploid systems equals that of a diploid system with no heterozygotes

#75 TheoPannetier closed 1 month ago
1
The Weir&Cockerham > Weir&Hill estimator if heterozygotes are present

#74 TheoPannetier closed 1 month ago
1
The Weir&Cockerham, Weir&Hill estimators converge if there are no heterozygotes

#73 TheoPannetier closed 1 month ago
1
In a multi-locus setting, the global Fst estimator is a ratio of averages of the Fst for each locus

#72 TheoPannetier closed 1 month ago
1
If there is no variation in the sample and all individuals are heterozygote, Fst = 0

#71 TheoPannetier closed 2 months ago
1
If all individuals are heterozygotes, Fis is -1

#70 TheoPannetier closed 2 months ago
1
If every individual is homozygote, Fis is 1

#69 TheoPannetier closed 2 months ago
1
The sign of the Fst depends on the variation within vs variation between populations

#68 TheoPannetier closed 2 months ago
1
Deploy genetics tests

#67 TheoPannetier closed 2 months ago
0
Initialising individuals from InitIndFile: Males not initialised when propmale==1.0

#66 JetteReeg closed 1 month ago
1
Enable negative values for alpha parameters of transfer traits

#65 TheoPannetier closed 1 month ago
2
Rename inIndVar

#64 TheoPannetier closed 2 months ago
1
Merging new genetics into translocation

#63 JetteReeg closed 3 months ago
0
Bugfix RangeShiftR/terra

#62 JetteReeg closed 3 months ago
1
Bug with RangeShiftR/terra

#61 JetteReeg closed 3 months ago
1
compare branches

#27 TheoPannetier closed 4 months ago
0
Write dominance coefficients to output

#60 TheoPannetier closed 2 months ago
1
Should GeneticFitness mutations be cumulative?

#59 TheoPannetier closed 4 months ago
1
Enabling pleiotropy

#58 TheoPannetier opened 4 months ago
0
Neutral allele frequencies conform to a Hardy-Weinberg equilibrium

#57 TheoPannetier closed 2 months ago
1
Deleterious allele frequencies conform to Hardy-Weinberg equilibrium

#56 TheoPannetier closed 1 month ago
1
The number of offspring who emigrate is proportional to the mutation rate

#55 TheoPannetier closed 2 months ago
1
The nb of unviable offspring is proportional to the mutation rate

#54 TheoPannetier closed 2 months ago
1
The correct number of individuals are sampled

#53 TheoPannetier closed 2 months ago
1
The correct number of patches is sampled

#49 TheoPannetier closed 2 months ago
1
If there is only one sampled population, its self-pairwise Fst equals the global Fst

#50 TheoPannetier closed 2 months ago
1
If there is only one locus, the per-locus Fst equals the global Fst

#51 TheoPannetier closed 2 months ago
1
The Fst calculations are correct

#41 TheoPannetier closed 2 months ago
1
Ploidy doesn't affect the Fst other than through heterozygosity

#42 TheoPannetier closed 2 months ago
1
If two sampled pops have the same alleles in the same frequencies, Fst is 0

#43 TheoPannetier closed 2 months ago
1
If two sampled pops are monomorphic for different alleles, Fst is 1

#44 TheoPannetier closed 2 months ago
1
If the sample is too small to compute F-stats, Fst evaluates to zero

#45 TheoPannetier closed 2 months ago
1
In haploid settings, Ho is always zero

#46 TheoPannetier closed 4 months ago
1
If every individual in a sample is homozygote, Ho is zero

#47 TheoPannetier closed 2 months ago
1
If an allele is largely more dominant than its homologue, only this allele expresses

#48 TheoPannetier closed 3 months ago
1
If the GeneticFitness phenotype is 0, individual always survives

#40 TheoPannetier closed 3 months ago
1
If the genetic fitness phenotype is 1, individual always dies

#39 TheoPannetier closed 3 months ago
1
Mutations are sampled in the correct distribution

#38 TheoPannetier closed 3 months ago
1
Individuals inherit alleles from their parents

#37 TheoPannetier closed 4 months ago
1
If a trait is not evolvable, the individual uses the species value

#36 TheoPannetier closed 3 months ago
1
Sex-dependent traits use the parameters for the correct sex

#35 TheoPannetier closed 3 months ago
1
Dispersal trait phenotypes always take valid values for the trait

#34 TheoPannetier closed 3 months ago
2
The dominance coefficient of a genetic fitness trait cannot be negative

#33 TheoPannetier closed 3 months ago
2
The phenotype of each genetic fitness trait is bound between 0 and 1

#32 TheoPannetier closed 3 months ago
1
The mutation of a genetic fitness trait cannot exceed -1 or 1

#31 TheoPannetier closed 3 months ago
1
Genetic linkage does occur

#30 TheoPannetier closed 4 months ago
1
Two genes using the same position are in complete linkage

#52 TheoPannetier closed 4 months ago
1
If the recombination rate is zero, no recombination occurs

#29 TheoPannetier closed 3 months ago
1