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ResearchIT
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IGV-ScanFold
IGV + RNA folding tools
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Update igv, build process, python, java
#42
njbooher
closed
1 year ago
0
Problem with running on M1 Mac
#41
irinatu
closed
1 year ago
4
Warn users to wait for jobs to finish before starting new one
#40
rjandr
opened
2 years ago
0
Update README.md
#39
wbrouse
closed
2 years ago
0
Java CI with gradle build failing
#38
rjandr
closed
2 years ago
1
Old OSX compatibility
#37
njbooher
closed
3 years ago
0
Ubuntu 20
#36
njbooher
closed
3 years ago
0
Add debug mode to run_scanfold.py
#35
njbooher
opened
3 years ago
0
Generate extracted structure tracks for ScanFold RNAstructure runs
#34
njbooher
opened
3 years ago
0
Double zip fix
#33
njbooher
closed
3 years ago
0
Windows Action #52
#32
wbrouse
closed
3 years ago
2
Mac Action #60
#31
wbrouse
closed
3 years ago
2
have rnastructure/rnafold-only runs generate a base pair track file
#30
njbooher
closed
3 years ago
0
Run RNAfold, RNAStructure standalone
#29
njbooher
closed
3 years ago
0
Flip structure extracts for reverse strand ScanFolds
#28
rjandr
opened
3 years ago
2
Version 0.1.9 Windows Testing Issues
#27
wbrouse
closed
3 years ago
1
Version 0.1.9 Mac Testing Issues
#26
wbrouse
closed
3 years ago
0
make a docker container
#25
njbooher
opened
3 years ago
0
add option to run rnafold/runastructure without scanfold
#24
njbooher
closed
3 years ago
0
Prevent running on sequences over a certain size
#23
njbooher
opened
3 years ago
0
Varna colormap
#22
njbooher
closed
3 years ago
5
Add rnastructure as an option
#21
njbooher
closed
3 years ago
0
Create a single IGV-ScanFold .exe file for running on windows
#20
rjandr
closed
3 years ago
4
Add predicted runtime or progress bar to Scanfold window
#19
njbooher
closed
3 years ago
2
ScanFoldIGV name change to IGV-ScanFold
#18
rjandr
closed
3 years ago
1
Color varna popup with zavg data
#17
rjandr
closed
3 years ago
1
Add a readme to mac and windows bundles
#16
njbooher
opened
3 years ago
0
The -2filter.varnascanfold file is sometimes empty, causing error
#15
rjandr
closed
3 years ago
1
Potential multiprocessing error on Windows
#14
rjandr
closed
3 years ago
2
PI Suggestions
#13
wbrouse
closed
3 years ago
1
Windows bundle not running ScanFold
#12
wbrouse
closed
3 years ago
5
Reverse strand Zavg track not populating
#11
rjandr
closed
3 years ago
1
Mac bundle pops up messages about missing hash functions
#10
njbooher
closed
3 years ago
3
Remove need for a run_me.command in mac build
#9
njbooher
closed
3 years ago
0
Disable run button after a job is launched until it finishes
#8
njbooher
closed
3 years ago
0
Improve ScanFold update process
#7
njbooher
closed
3 years ago
1
Varna popup causes crash on some Macs
#6
njbooher
opened
3 years ago
1
Spaces in genome sequences break everything
#5
njbooher
opened
3 years ago
0
runme.bat doesn't handle spaces in folder paths
#4
njbooher
closed
3 years ago
2
Release 0.1.7 strand error
#3
rjandr
closed
3 years ago
2
MacOS bundle
#2
njbooher
closed
3 years ago
0
numpy-1.19.4 incompatibility
#1
rjandr
closed
3 years ago
4