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Feedback on the ROBOKOP project
https://robokop.renci.org
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Arrange 15-minute meeting with owners of the NIEHS Causaly questions
#53
capasfield
closed
1 year ago
1
Implementation details and division of tasks
#52
capasfield
closed
1 year ago
0
Discuss Cell-embedding algorithms
#51
capasfield
closed
1 year ago
0
Discuss Metapath embedding algorithms
#50
capasfield
closed
1 year ago
0
Continue work on Automat UI
#49
capasfield
closed
1 year ago
0
Work on testing and QC during graph building - how do we know nothing broke from build to build etc
#48
capasfield
closed
1 year ago
0
Work on metadata produced by ORION and how to display it in automat
#47
capasfield
closed
1 year ago
0
Point old robokop UI URL at the new qgraph UI
#46
capasfield
closed
1 year ago
0
Move codebase from Data Services to new ORION repo
#45
capasfield
closed
1 year ago
0
Finish deploying biolink 2 graphs in prod
#44
capasfield
closed
1 year ago
0
Evaluate Diffusion
#43
cbizon
opened
1 year ago
0
Compare with previous pair embedding (D-D’|D-T|D’-T) methods
#40
capasfield
closed
1 year ago
0
Conduct QSART analysis
#39
capasfield
closed
1 year ago
0
Extract embedding for specific pairs
#38
capasfield
closed
1 year ago
1
MetaPath Embedding
#37
capasfield
closed
1 year ago
0
Better understand the NIEHS request for “predict chemical toxicity on AOPs” and develop an analysis plan
#36
capasfield
closed
1 year ago
1
Create Jupyter notebooks with basic queries and processing to serve as the basis of future work
#35
capasfield
closed
1 year ago
1
Train RTI staff on different methods for accessing ROBOKOP
#34
capasfield
closed
1 year ago
1
Continue working on current tasks.
#33
capasfield
closed
1 year ago
0
Fix Robokop UI
#32
capasfield
closed
1 year ago
1
Build and deploy STRING-DB Automat
#31
capasfield
closed
1 year ago
1
Build robokopkg with STRING-DB and Chebi properties using biolink2
#30
capasfield
closed
1 year ago
0
Finish deploying biolink3 in dev
#29
capasfield
closed
1 year ago
1
Consider additional queries
#28
capasfield
closed
1 year ago
0
Obtain the names of the owners of the NIEHS Causaly questions
#27
capasfield
closed
1 year ago
0
Begin reviewing results for scientific impact / technical issues
#26
capasfield
closed
1 year ago
0
Work with Nyssa to iteratively refine queries
#25
capasfield
closed
1 year ago
1
ROBOKOP User Queries/Answers: Persistence
#24
karafecho
opened
1 year ago
0
ROBOKOP UI: About Page GitHub Repo
#23
karafecho
closed
5 months ago
5
ROBOKOP UI: Login Issues
#22
karafecho
closed
5 months ago
1
ROBOKOP UI: Capitalization (minor issue)
#21
karafecho
closed
5 months ago
2
AIM 1: Add Metadata to Pipeline
#20
cbizon
closed
1 year ago
0
AIM 2 (NCCU) - COAST
#19
capasfield
closed
1 year ago
1
ROBOKOP UI is broken
#18
karafecho
closed
5 months ago
0
What info do we want to display for each data source?
#17
capasfield
closed
1 year ago
4
AIM 3 - ROBOKOP vs Causaly
#16
capasfield
closed
1 year ago
1
AIM 2 (NCCU) - Discussion on Tudo Recent Paper
#15
capasfield
closed
1 year ago
0
AIM 2 (RTI) - Better understand the NIEHS request for “predict chemical toxicity on AOPs” and develop an analysis plan
#14
capasfield
closed
1 year ago
0
AIM 2 (RTI) - Create Jupyter notebooks with basic queries and processing to serve as the basis of future work
#13
capasfield
closed
1 year ago
0
AIM 2 (RTI) - Train RTI staff on different methods for accessing ROBOKOP
#12
capasfield
closed
1 year ago
0
AIM 1 - Incorporate stringdb interactions [JMB]
#11
capasfield
closed
1 year ago
1
AIM 1 - Start design of automat landing page
#10
capasfield
closed
1 year ago
1
AIM 1- Deploy CHEBI properties to translator-dev, translator-prod
#9
capasfield
closed
1 year ago
1
AIM 1 - Deploy biolink 3 graphs to translator-dev
#8
capasfield
closed
1 year ago
0
AIM 1 - Implement qualified predicate query in the Transpiler
#7
capasfield
closed
1 year ago
1
AIM 2 (RTI) - Identified staff and initiated project on RTI side
#6
capasfield
closed
1 year ago
0
AIM 3 - Review Prior Work on Translator/ROBOKOP Competitors
#5
capasfield
closed
1 year ago
0
AIM 1 - Partial implementation of CHEBI property parser
#4
capasfield
closed
1 year ago
0
AIM 1 - Partial implementation of biolink 3
#3
capasfield
closed
1 year ago
0
PermaLinks
#2
karafecho
opened
1 year ago
1
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