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SACGF
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cdot
Transcript versions for HGVS libraries
MIT License
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Make a proper release
#85
davmlaw
opened
2 weeks ago
0
FastaSeqFetcher improvements
#84
davmlaw
opened
2 weeks ago
0
Ensembl files missing protein - breaking c_to_p
#83
davmlaw
closed
2 weeks ago
3
hgvs c_to_p failing with Ensembl transcript
#82
chubukov
closed
2 weeks ago
7
Method that returns latest data version
#81
davmlaw
closed
1 month ago
1
Ensembl 212 release
#80
davmlaw
closed
1 month ago
2
RefSeq missing MT transcripts
#79
davmlaw
closed
1 month ago
6
JSON breaking schema changes
#78
davmlaw
opened
6 months ago
2
Document JSON.gz files, and Transcript format
#77
davmlaw
opened
6 months ago
0
CDS phase (offset for eg ribo slippage)
#76
holtgrewe
opened
6 months ago
5
Clarify _<symbol> entries
#75
holtgrewe
closed
6 months ago
1
fix: mt_gene for GRCh37 ENSEMBL
#74
holtgrewe
closed
6 months ago
0
HGNC ID still missing for some chrMT genes in ENSEMBL
#73
holtgrewe
closed
6 months ago
5
Processing of mitochondrial genes RNA genes broken for ENSEMBL
#72
holtgrewe
closed
6 months ago
2
Mane Plus Clinical tags missing from gff.json.gz files
#71
holtgrewe
closed
6 months ago
2
Use Snakemake to build transcripts
#70
davmlaw
opened
6 months ago
7
Transcripts from NCBI/Ensembl API
#69
davmlaw
opened
7 months ago
0
Ensembl 111
#68
davmlaw
closed
7 months ago
0
HGVS to VCF Output for HGVS nomenclature with Duplication
#67
Mchhu
closed
9 months ago
1
Properly tag selenoproteins
#66
holtgrewe
closed
10 months ago
2
fix: adding dependencies to setup.cfg
#65
holtgrewe
closed
10 months ago
3
Split code and data releases?
#64
holtgrewe
closed
10 months ago
5
Create VEP-compatible releases in CI
#63
holtgrewe
opened
10 months ago
1
Add tests to CI
#62
holtgrewe
opened
10 months ago
0
fix: RefSeq GFF file now uses the key GenBank rather than Genbank (#60)
#61
holtgrewe
closed
10 months ago
1
cdot 0.2.21 NM_007294.4 is missing protein ID NP_009225.1 on GRCh38
#60
holtgrewe
closed
10 months ago
0
Note: PRSS2 / HGNC:9483 missing from cdot v0.2.21 GRCh37/RefSeq
#59
holtgrewe
closed
10 months ago
3
Create release vor VEP110
#58
holtgrewe
closed
10 months ago
1
"NM_138693.4" json generation error
#57
ltnetcase
closed
11 months ago
4
Retrieving duplicate exons from UTA for some transcripts
#56
davmlaw
closed
10 months ago
2
FastaSeqFetcher - investigate differences between refseq and fasta exon generated transcript
#55
davmlaw
opened
1 year ago
1
Diff coding coordinates from latest
#54
davmlaw
opened
1 year ago
0
UTA to cdot transcript start/end conversion issue
#53
davmlaw
closed
1 year ago
1
Ensembl 110
#52
davmlaw
closed
1 year ago
1
Historical GRCh38 refseq
#51
davmlaw
opened
1 year ago
3
Biotype - missing in Ensembl transcripts
#50
davmlaw
closed
1 year ago
1
MT not converted to contigs correctly (GRCh37/Ensembl only)
#49
davmlaw
closed
1 year ago
0
get_tx_exons - return extra fields if possible
#48
davmlaw
closed
1 year ago
1
Implement get_alignments_for_region
#47
davmlaw
closed
1 year ago
2
get_tx_info should properly handle alt_ac and alt_aln_method
#46
davmlaw
closed
1 year ago
1
FastaSeqFetcher - handle deletions
#45
davmlaw
closed
1 year ago
2
Support for non-human species
#44
davmlaw
closed
1 year ago
0
Contigs not converted to accession numbers properly
#43
davmlaw
closed
1 year ago
0
Ensembl T2T - CHM13v2 GTF
#42
davmlaw
closed
1 year ago
0
Support T2T
#41
davmlaw
closed
1 year ago
1
Explain file downloads
#40
holtgrewe
closed
1 year ago
4
Fasta file SeqFetcher implementation
#39
davmlaw
closed
1 year ago
2
Differing implementation of get_tx_for_region to hgvs one
#38
holtgrewe
closed
1 year ago
3
Provide python-attrs classes?
#37
holtgrewe
opened
1 year ago
1
Transcript aliases - HGVS using gene names (canonical transcripts) or LRG
#36
davmlaw
opened
1 year ago
2
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