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SACGF
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cdot
Transcript versions for HGVS libraries
MIT License
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Tags (ie MANE Select / RefSeq select etc) should be genome build specific
#35
davmlaw
closed
1 year ago
0
PyHGVS - no transcript exception isn't great
#34
davmlaw
closed
1 year ago
1
Pyhgvs data conversion - non-coding transcripts have bad cds start/end conversion
#33
davmlaw
closed
1 year ago
0
Signature of pyvs_transcript.py get_pyhgvs_data inconsistant
#32
TheMadBug
closed
1 year ago
1
Upload release gzip files to github
#31
davmlaw
closed
1 year ago
0
Store transcript tags
#30
davmlaw
closed
1 year ago
1
All json.gz files should have cdot version in the name
#29
davmlaw
closed
1 year ago
0
Move up/down transcript versions from VariantGrid to cdot
#28
davmlaw
opened
1 year ago
0
cdot responsible for fixing bad HGVS, allow warnings etc
#27
davmlaw
opened
1 year ago
5
Missing RefSeq GRCh37 GFF
#26
davmlaw
closed
1 year ago
1
GeneInfo currently fails for some records
#25
davmlaw
closed
1 year ago
0
Runbook to update/create cdot `json.gz` files
#24
DavidStreid
closed
1 year ago
3
UTA transcript conversion needs to provide cds_start/cds_end for pyhgvs
#23
davmlaw
closed
2 years ago
1
transcripts for region doesn't handle SNPs properly - HGVS relevant_transcripts fails
#22
davmlaw
closed
2 years ago
0
Implement HGVS data provider method get_similar_transcripts
#21
davmlaw
closed
2 years ago
1
Implement HGVS data provider method get_gene_info
#20
davmlaw
closed
2 years ago
3
Implement HGVS data provider method get_acs_for_protein_seq
#19
davmlaw
closed
2 years ago
1
Transcripts over a position
#18
davmlaw
closed
2 years ago
1
Add build patch version
#16
davmlaw
opened
2 years ago
1
Bad conversion of UTA cDNA matches
#15
davmlaw
closed
2 years ago
2
Add protein IDs to genes
#14
davmlaw
closed
2 years ago
5
Make UTA optional in refseq generation scripts
#13
davmlaw
closed
2 years ago
1
Don't use intermediate pyreference format - go straight to cdot merge_historical
#12
davmlaw
closed
2 years ago
0
Added NCBI release 110
#11
davmlaw
closed
2 years ago
0
Removing transcript accession number.
#10
Akazhiel
closed
2 years ago
2
ENSEMBL g_to_c
#9
Akazhiel
closed
2 years ago
5
Move pyreference gff_to_json code into cdot
#8
davmlaw
closed
2 years ago
0
Use ijson to reduce RAM usage
#7
davmlaw
closed
2 years ago
0
Handle alignment gap (CIGAR) mismatches
#6
davmlaw
closed
2 years ago
1
Do some benchmarks
#5
davmlaw
opened
2 years ago
3
Write a REST client
#4
davmlaw
closed
2 years ago
0
Create REST service
#3
davmlaw
closed
2 years ago
1
Script to combine genome builds
#2
davmlaw
closed
2 years ago
0
Get UTA transcripts
#1
davmlaw
closed
2 years ago
0
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