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SED-ML
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KiSAO
Ontology of algorithms for analyzing biological models, their parameters, and their outputs
Artistic License 2.0
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Parameter for relative quadrature tolerance for CVODES
#64
jonrkarr
closed
3 years ago
2
Parameter for absolute quadrature tolerance for CVODES
#63
jonrkarr
closed
3 years ago
2
New algorithm for parsimonious FBA (min number of active fluxes)
#62
jonrkarr
closed
3 years ago
2
New algorithm for quadratic convex optimization
#61
jonrkarr
closed
3 years ago
2
New algorithm for linear convex optimization
#60
jonrkarr
closed
3 years ago
2
New parameter for optimization solver
#59
jonrkarr
closed
3 years ago
2
New parameter for optimization method
#58
jonrkarr
closed
3 years ago
2
New algorithm for convex optimization
#57
jonrkarr
closed
3 years ago
2
New algorithm for interior point method
#56
jonrkarr
closed
3 years ago
2
New algorithm for simplex method
#55
jonrkarr
closed
3 years ago
2
New parameter for IDAS Error control strategy
#54
jonrkarr
closed
3 years ago
3
New algorithm for IDAS
#53
jonrkarr
closed
3 years ago
2
New parameter for CVODES stability limit detection flag
#52
jonrkarr
closed
3 years ago
3
New parameter for VODE Jacobian
#51
jonrkarr
closed
3 years ago
2
New parameter for dopri5 beta
#50
jonrkarr
closed
3 years ago
2
New parameter for dopri5 ifactor
#49
jonrkarr
closed
3 years ago
2
New parameter for dopri5 dfactor
#48
jonrkarr
closed
3 years ago
3
New parameter for dopri5 safety
#47
jonrkarr
closed
3 years ago
2
New algorithm for RK23
#46
jonrkarr
closed
3 years ago
2
New algorithm for ZVODE
#45
jonrkarr
closed
3 years ago
2
New algorithm for VODE
#44
jonrkarr
closed
3 years ago
2
Parameter for reactions
#43
jonrkarr
closed
3 years ago
2
Parameter for pFBA factor
#42
jonrkarr
closed
3 years ago
2
Parameter for loopless
#41
jonrkarr
closed
3 years ago
2
New parameter for fraction of optimum
#40
jonrkarr
closed
3 years ago
2
Parameter for number of parallel processes
#39
jonrkarr
closed
3 years ago
2
Algorithm for geometric FBA
#38
jonrkarr
closed
3 years ago
2
New algorithm for parsimonious FBA
#37
jonrkarr
closed
3 years ago
3
New algorithm for flux variability analysis
#36
jonrkarr
closed
3 years ago
2
New parameter for stop condition
#35
jonrkarr
closed
3 years ago
2
New term for partitioned leaping
#34
jonrkarr
closed
3 years ago
2
Add a KiSAO term for "combined solvers"
#33
jonrkarr
closed
3 years ago
3
KISAO terms for parameter estimation / optimization
#32
jonrkarr
closed
3 years ago
2
KISAO terms for DFBA
#31
jonrkarr
closed
3 years ago
4
Number of Runs
#30
jonrkarr
closed
3 years ago
2
KLU solver
#29
jonrkarr
closed
3 years ago
2
Typo (mine): 'dampening' -> 'damping'
#28
jonrkarr
closed
3 years ago
3
Term request: random asynchronous updating policy
#27
jonrkarr
closed
3 years ago
2
Term request: fully asynchronous updating policy
#26
jonrkarr
closed
3 years ago
2
Term request: synchronous updating policy
#25
jonrkarr
closed
3 years ago
3
Term request: asynchronous updating policy
#24
jonrkarr
closed
3 years ago
3
Remove “asynchronous logical model simulation method” (kisao:KISAO_0000450) and “synchronous logical model simulation method” (kisao:KISAO_0000449)
#23
jonrkarr
closed
3 years ago
7
Replace “Logical Model Simulation Method” (kisao:KISAO_0000448) by “Discrete Event Simulation algorithm”
#22
jonrkarr
closed
3 years ago
3
Fix definition of integration methods (kisao:KISAO_0000475)
#21
jonrkarr
closed
3 years ago
2
Typo in rule-based simulation method
#20
jonrkarr
closed
3 years ago
2
New term requests: maximum Adams order and maximum BDF order
#19
jonrkarr
closed
3 years ago
4
New term request: seed
#18
jonrkarr
closed
3 years ago
2
New term request: minimum dampening
#17
jonrkarr
closed
3 years ago
2
New term request: maximum iterations
#16
jonrkarr
closed
3 years ago
3
New term request: minimum time step
#15
jonrkarr
closed
3 years ago
2
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