issues
search
SED-ML
/
KiSAO
Ontology of algorithms for analyzing biological models, their parameters, and their outputs
Artistic License 2.0
9
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Create new 'DAE Solver' category; put IDA-like things in it.
#115
luciansmith
closed
6 months ago
1
Make 407 the root-finding steady state algorithm.
#114
luciansmith
closed
1 year ago
0
A handful of changes:
#113
luciansmith
closed
1 year ago
1
Automatic releases no longer working
#112
luciansmith
opened
1 year ago
2
Update for release
#111
luciansmith
closed
1 year ago
0
Add two new terms, change organization.
#110
luciansmith
closed
1 year ago
5
Request: New base 'simulate in time' algorithm
#109
luciansmith
closed
1 year ago
4
Fix typo in definition of "biological state optimization method"
#108
jonrkarr
closed
6 months ago
0
feat: added algorithm concepts for MPP
#107
jonrkarr
closed
2 years ago
6
Enable query algorithms for recommendations for algorithms to be terms for abstract classes of algorithms (e.g., Gillespie-like rather than SSA)
#106
jonrkarr
opened
2 years ago
0
feat: Added algorithms and characteristics for attractor methods in mpbn
#105
jonrkarr
opened
2 years ago
0
New terms for mpbn
#104
pauleve
opened
2 years ago
8
Automatic update of KISAO on obo foundry and ontology lookup service (OLS)
#103
matthiaskoenig
opened
2 years ago
6
Release 2.30 not triggered
#102
matthiaskoenig
closed
2 years ago
3
SED-ML aggregation functions
#101
matthiaskoenig
closed
2 years ago
0
Add terms for terms of UniformTimeCourse
#100
luciansmith
opened
3 years ago
4
labels of systems properties should be lowercase
#99
matthiaskoenig
closed
3 years ago
5
Some KISAO terms fail lookup with `get_normalized_id`
#98
matthiaskoenig
closed
2 years ago
3
Some KISAO terms do not match KISAO pattern
#97
matthiaskoenig
closed
3 years ago
3
New terms for uniform time course attributes
#96
jonrkarr
opened
3 years ago
0
Specify that math functions ignore NaN.
#95
luciansmith
closed
3 years ago
1
Clarify math functions as to whether to ignore NaN
#94
luciansmith
closed
3 years ago
3
SED-ML Aggregation function (New terms for count, stddev, variance)
#93
jonrkarr
closed
2 years ago
5
Lps karr new terms
#92
jonrkarr
closed
3 years ago
1
New KiSAO terms from https://docs.google.com/spreadsheets/d/1f3rBUUhO…
#91
luciansmith
closed
3 years ago
2
New terms for SED-ML use
#90
luciansmith
closed
3 years ago
13
Automate release to BioPortal in GitHub action
#88
jonrkarr
closed
3 years ago
2
Change redirect for biomodels.net from SourceForge to GitHub
#87
jonrkarr
closed
3 years ago
1
Add terms for slices of dimensions of (in)dependent variables of outputs of simulations
#86
jonrkarr
opened
3 years ago
2
Add terms for (in)dependent variables of outputs of simulations
#85
jonrkarr
closed
3 years ago
11
New algorithm for GillesPy2 Hybrid Tau-Leaping Method
#84
jonrkarr
closed
3 years ago
2
Some recently added terms are not visibile in the Ontology Lookup Service
#83
jonrkarr
closed
3 years ago
3
New parameter for species transition probabilities for asynchonrous logical model simulation method
#82
jonrkarr
closed
3 years ago
2
New algorithm for probabilistic logical model simulation method
#81
jonrkarr
closed
3 years ago
2
New parameter for noise level
#80
jonrkarr
closed
3 years ago
2
New parameter for absolute tolerance adjustment factor for CVODE
#79
jonrkarr
closed
3 years ago
2
New parameter for auto reduce tolerances
#78
jonrkarr
closed
3 years ago
2
New algorithm for Stochastic second order Runge-Kutta method
#77
jonrkarr
closed
3 years ago
2
New algorithm for nleq2
#76
jonrkarr
closed
3 years ago
2
New algorithm for Stochastic differential equation method
#75
jonrkarr
closed
3 years ago
3
New parameter for force physical correctness
#74
jonrkarr
closed
3 years ago
2
New parameter for absolute tolerance for root finding
#73
jonrkarr
closed
3 years ago
2
New algorithm for stochastic Runge-Kutta method
#72
jonrkarr
closed
3 years ago
2
Pahle hybrid Gibson-Bruck Next Reaction method/RK-45 method
#71
jonrkarr
closed
3 years ago
2
New algorithm for Pahle hybrid Gibson-Bruck Next Reaction method/LSODA method
#70
jonrkarr
closed
3 years ago
2
New algorithm for Pahle hybrid Gibson-Bruck Next Reaction method/Runge-Kutta metho
#69
jonrkarr
closed
3 years ago
4
New algorithm for LSODA or LSODAR
#68
jonrkarr
closed
3 years ago
2
New parameter for initial step size
#67
jonrkarr
closed
3 years ago
2
Parameter for relative steady-state tolerance for CVODES
#66
jonrkarr
closed
3 years ago
2
Parameter for absolute steady-state tolerance for CVODES
#65
jonrkarr
closed
3 years ago
2
Next