Sage-Bionetworks NF_LandscapePaper_2019 issues

Sage-Bionetworks / NF_LandscapePaper_2019

This repository hosts all the code used to generate analyses and figures for the landscape paper

3 stars 1 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

update ToC on readme - there are unlisted notebooks :)

#113 allaway opened 3 years ago
0
Adding updated figures to GH

#112 jaybee84 closed 4 years ago
0
Updated methods - metaviper and tumor deconv

#111 sgosline closed 4 years ago
0
Supplementary fig 3

#110 jaybee84 closed 4 years ago
0
more renaming

#109 allaway closed 4 years ago
0
add RF ensemble to methods

#108 jaybee84 closed 4 years ago
0
All figures

#107 jaybee84 closed 4 years ago
0
Rename fig5_GeneticVariants.Rmd to fig4_GeneticVariants.Rmd

#106 jaybee84 closed 4 years ago
0
Delete Fig4_updated_withLV24.pdf

#105 jaybee84 closed 4 years ago
0
Delete Fig4.pdf

#104 jaybee84 closed 4 years ago
0
Adding updated Fig2

#103 jaybee84 closed 4 years ago
0
adding LV24 into Fig 4 subpanel

#102 jaybee84 closed 4 years ago
0
Delete Fig3.pdf

#101 allaway closed 4 years ago
0
Delete Fig2_2.pdf

#100 allaway closed 4 years ago
0
Delete placeholder.txt

#99 allaway closed 4 years ago
0
Updated fig1

#98 sgosline closed 4 years ago
0
interesting drug enrichment

#97 allaway closed 4 years ago
0
Update lv name

#96 jaybee84 closed 4 years ago
2
run drug target SEA with true "drugs" only

#95 allaway closed 4 years ago
1
tried to plot drug target means by LV

#94 sgosline closed 4 years ago
0
moving files

#93 allaway closed 4 years ago
7
Updated metaviper/gsea enrichment

#92 allaway closed 4 years ago
4
Vipergsea

#91 allaway closed 4 years ago
1
fix raincloudz colorz

#90 allaway closed 4 years ago
0
update fig 4

#89 allaway closed 4 years ago
0
Lv immune bugfix

#88 sgosline closed 4 years ago
0
Some gene variant plots

#87 sgosline closed 4 years ago
2
Meta viper fig - at least first panel

#86 sgosline closed 4 years ago
0
Created panels for Figure 6- will edit mannually in illustrator.

#85 sgosline closed 4 years ago
1
Figure 4

#84 jaybee84 closed 4 years ago
2
updated with new colors

#83 sgosline closed 4 years ago
0
add figure 4?

#82 allaway closed 4 years ago
1
Figs

#81 jaybee84 closed 4 years ago
4
cibersort ridgeplot for mast cell comparison

#80 allaway closed 4 years ago
1
add cibersort/mcpcounter script

#79 allaway closed 4 years ago
3
heatmap doesn't show up in md but is plotted

#78 sgosline closed 4 years ago
2
raincloudz!

#77 allaway closed 4 years ago
1
fig4 -1st draft

#76 jaybee84 closed 4 years ago
4
LV figure

#75 allaway closed 4 years ago
0
updated with new fig - this time with PCA

#74 sgosline closed 4 years ago
1
adding ensemble for RNASeq data for primary NF1 tumors

#73 jaybee84 closed 4 years ago
1
Summary of latent variables and correlates

#72 sgosline closed 4 years ago
2
Re-ran immune, metaviper and genomic tests on selected LVs

#71 sgosline closed 4 years ago
0
Adding new analysis with a final holdout dataset

#70 jaybee84 closed 4 years ago
0
update lockfile???

#69 allaway closed 4 years ago
0
Come up with strategy of selecting LVs from Random Forest

#68 sgosline closed 4 years ago
16
LV-specific interrogation of immune subtypes

#67 sgosline closed 4 years ago
0
decided this would not be fig2, so adding to fig1

#66 sgosline closed 4 years ago
0
Add four MPNST samples to Multiplier analysis

#65 sgosline closed 4 years ago
1
Update multiplier table to add transplantation type

#64 sgosline closed 4 years ago
6