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SainsburyWellcomeCentre
/
aeon_mecha
Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.
BSD 3-Clause "New" or "Revised" License
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Use Block Due Time from `Environment_BlockState` in ingestion
#403
jkbhagatio
closed
1 month ago
1
Clear all CI checks on all platforms
#402
glopesdev
closed
2 months ago
4
Allow forwarding of load function kwargs to reader
#401
glopesdev
closed
2 months ago
4
Load blob tracking data for animal position when missing SLEAP data
#400
ttngu207
closed
1 week ago
4
Incorporate new block plots from `update_block_plots` branch into the pipeline
#399
ttngu207
closed
1 month ago
2
Update logic to retrieve threshold-specific pellet delivery timestamps
#398
ttngu207
closed
1 month ago
6
Add table & reader for `Environment Active Configuration`
#397
ttngu207
closed
2 months ago
1
Optimization of database storage
#396
ttngu207
closed
1 week ago
18
Block Analysis Todos
#395
jkbhagatio
closed
1 week ago
1
Pull from `main`, minor updates to automated worker
#394
ttngu207
closed
3 months ago
0
updated default bitmask for DeliverPellet
#393
jkbhagatio
closed
3 months ago
1
Add experiment name to animal comment in pyrat
#392
jkbhagatio
closed
1 week ago
1
Add reader for 'Environment_ActiveConfiguration' stream
#391
jkbhagatio
closed
1 week ago
1
Incorrect prioritization of multiple input root directories when calling `api.load()`
#390
ttngu207
closed
3 months ago
6
Add devices_schema for social0.4 and other minor code cleanup
#388
ttngu207
closed
3 months ago
0
fix(Pose): remove config_file from class property
#384
ttngu207
closed
4 months ago
2
fix(Pose): remove `config_file` from class property
#383
ttngu207
closed
4 months ago
0
Add threshold-specific pellet delivery timestamps as dj table
#382
jkbhagatio
closed
1 week ago
2
Update SLEAP data ingestion
#381
ttngu207
closed
4 months ago
0
fix(Pose): remove `config_file` from class property
#380
ttngu207
closed
4 months ago
1
add patch_threshold at BlockSubjectAnalysis
#379
ttngu207
closed
4 months ago
0
Support social0.3 data, update SLEAP tracking with the new Pose Reader (Bonsai-sleap 3.0), bugfix BlockDetection
#378
ttngu207
closed
4 months ago
1
Ensure all aeon submodules included in wheel
#376
glopesdev
closed
3 months ago
0
Installing from main branch using pip reports missing packages
#375
glopesdev
closed
3 months ago
0
Update SLEAP data ingestion to work with the new Pose Reader for Bonsai-Sleap0.3
#374
ttngu207
closed
4 months ago
0
Minor improvement suggestions
#373
ttngu207
closed
4 months ago
0
Updated Pose Reader for Bonsai-Sleap0.3
#372
jkbhagatio
closed
4 months ago
1
Generalizing the low-level data API for ephys data
#371
glopesdev
opened
5 months ago
0
fix: bugfix in Block Detection
#370
ttngu207
closed
5 months ago
0
Ingest combined full pose and ID sleap data
#369
anayapouget
closed
2 months ago
0
Review `block_ends` in block_analysis.Block
#368
jkbhagatio
closed
1 week ago
1
Add reader for CameraLightMonitor stream
#367
jkbhagatio
opened
5 months ago
0
feat: update devices schema for social 0.3 ingestion
#366
ttngu207
closed
5 months ago
0
Update pose reader to output string subject names directly, from config file, rather than the int class values
#365
jkbhagatio
closed
4 months ago
0
Update pose reader to account for new format of Bonsai.Sleap v0.3
#364
jkbhagatio
closed
4 months ago
1
BlockSubjectPatch analysis, patch preference plot and SciViz update
#363
ttngu207
closed
5 months ago
0
`activepatch` returns df with MultiIndex instead of the expected DatetimeIndex
#362
lochhh
opened
5 months ago
0
Improve block analysis - skip subjects with no position data, bugfix Block detection
#361
ttngu207
closed
6 months ago
0
fix first chunk starting before epoch start & disable automatic BlockDetection
#360
ttngu207
closed
7 months ago
0
Block State - pellet time does not belong to any epoch
#359
ttngu207
closed
6 months ago
2
Multiple patch rates and offsets found in one patch for one block
#358
ttngu207
closed
1 week ago
5
Improve automated analysis
#356
ttngu207
closed
7 months ago
1
update(tracking): raise error if no SLEAP data found
#355
ttngu207
closed
7 months ago
0
No SLEAP data found in some chunks
#354
ttngu207
closed
3 months ago
4
feat(block_analysis): retrieve patch offset
#353
ttngu207
closed
7 months ago
0
fix(acquisition): remove debugging codeblock
#352
ttngu207
closed
7 months ago
0
Datajoint pipeline PR into `main` branch
#351
ttngu207
closed
5 months ago
1
fix(tracking): bugfix searching for SLEAP model config file for multi-dir
#350
ttngu207
closed
7 months ago
0
feat(acquisition): refactor Epoch & Metadata ingestion
#349
ttngu207
closed
7 months ago
0
feat(dj): ingest data by searching multiple directories in specified order
#348
ttngu207
closed
7 months ago
0
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