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SchulzLab
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Aeron
Alignment, quantification and fusion prediction from long RNA reads
MIT License
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Error:/usr/bin/bash: tmp/aligner_stdout.txt: No such file or directory
#31
Dhwani-2410
opened
1 year ago
0
Aeron cannot be run on simulation dataset
#30
qinqian
opened
1 year ago
0
Reimplementation of graph builder by using pandas and BCBio GFF
#29
seungbeom-han
closed
2 years ago
0
Error in rule postprocess
#28
20kav
closed
2 years ago
0
GraphBuilder outputs empty file
#27
majorkazer
opened
3 years ago
2
quantification issue (Error in rule allig JobID 7)
#26
karlowatz
opened
3 years ago
1
loose fusions rule error
#25
f0t1h
opened
3 years ago
1
Problem with the latest commits
#24
f0t1h
opened
3 years ago
1
Inconsistencies in fusion read table
#23
mzwaig
opened
3 years ago
0
Error with FusionFinder: Memory and time requiement
#22
lufeng891109
opened
3 years ago
0
Erros in download hg38.gfa
#21
iskyer1980
opened
3 years ago
0
erro in generateCountMatrix
#20
iskyer1980
opened
3 years ago
2
Error while calling fusions
#19
nadiadavidson
opened
3 years ago
4
Memory requirements
#18
areebapatel
opened
3 years ago
1
Error in rule align_with_secondaries:
#17
Bodako
opened
3 years ago
3
beginner error
#16
RichardCorbett
opened
3 years ago
16
list index out of range when running GraphBuilder.py
#15
noncodo
opened
3 years ago
1
Binaries/Postprocess: /lib64/libc.so.6: version `GLIBC_2.17' not found (required by Binaries/Postprocess)
#14
pynie1
closed
4 years ago
1
Remaining adapter sequences
#13
cnk113
closed
4 years ago
3
Issues with output from quantification step
#12
jpgvtech
closed
3 years ago
5
ERROR in rule align
#11
Br1anChou
closed
4 years ago
5
FusionFinder: src/FusionFinder.cpp:41: std::__cxx11::string geneFromTranscript(std::__cxx11::string): Assertion `!match.empty()' failed.
#10
lane-zhao
opened
4 years ago
9
error running Aeron software
#9
sandybioteck
opened
4 years ago
4
AttributeError: 'ParseGTF' object has no attribute 'getTranscriptPosition'
#8
FiannacaA
closed
4 years ago
1
MissingInputException in line 127 of ./Aeron/Snakefile_fusion: Missing input files for rule sam_to_bam:
#7
chalkidiki
opened
4 years ago
15
Missing input files for rule pair_assignments: "output/aln_{transcripts}_{graph}_full_length.gam"
#6
FiannacaA
closed
4 years ago
1
Example output files?
#5
stianlagstad
closed
4 years ago
4
.gfa missing, difficulties with graphbuilder
#4
qiikong
opened
4 years ago
6
MissingInputException in line 59 of Snakefile_fusion: `input files for rule pair_assignments
#3
lane-zhao
closed
4 years ago
4
Missing default value for fusion detection
#2
wangyiqing50
closed
4 years ago
7
WARNING: The graph has an edge between non-existant node(s)
#1
lane-zhao
closed
4 years ago
7