issues
search
SciLifeLab
/
TACA
Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm
MIT License
14
stars
16
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Switch to tarball and skip compression
#435
chuan-wang
opened
2 days ago
3
Update taca-ngi-pipeline repo url
#434
aanil
closed
1 week ago
1
For re-demux: keep PDC archive date if exists
#433
chuan-wang
closed
2 weeks ago
1
Initial setup for element aviti
#432
ssjunnebo
opened
1 month ago
6
update anglerfish command used
#431
kedhammar
closed
1 month ago
1
Add section header in samplesheet for run folder transfer
#430
chuan-wang
closed
3 months ago
1
Improve ci
#429
kedhammar
closed
3 months ago
1
Fix mypy inclusivity
#428
kedhammar
closed
3 months ago
0
Update server status to reflect ngi-preproc
#427
aanil
closed
4 months ago
0
Reduce redundant specificity for anglerfish samplesheet pattern
#426
kedhammar
closed
4 months ago
1
Fix erroneous name of pod5 output dir for ONT runs
#425
kedhammar
closed
5 months ago
0
Broaden ONT transfer script's categorization of QC runs
#424
kedhammar
closed
5 months ago
0
Refine versionlog check and bump versionlog
#423
kedhammar
closed
5 months ago
0
Change db names
#422
alneberg
closed
6 months ago
1
Increase test coverage
#421
kedhammar
closed
6 months ago
0
Fix cases that MiSeq samplesheet misses index or index2
#420
chuan-wang
closed
6 months ago
3
Fix and improve TACA for handling QC runs
#419
kedhammar
closed
7 months ago
2
Bump test coverage to 20%
#418
kedhammar
closed
7 months ago
1
Experiment w. CodeCov
#417
kedhammar
closed
8 months ago
2
Implement CodeCoverage
#416
kedhammar
closed
8 months ago
2
Try integrating CodeCov in GHA
#415
kedhammar
closed
8 months ago
0
Fix bug with isinstance clause
#414
chuan-wang
closed
8 months ago
0
Implement CI testing and increase testing coverage
#413
kedhammar
closed
8 months ago
1
Fix bugs that changs in PR #404 were reverted in PR #411
#412
chuan-wang
closed
8 months ago
1
Introduce CI to repo
#411
kedhammar
closed
8 months ago
0
More improvements on TACA running Anglerfish
#410
kedhammar
closed
8 months ago
0
Update how Anglerfish is applied
#409
kedhammar
closed
8 months ago
2
Adapt to new ONT pod5 format
#408
kedhammar
closed
8 months ago
0
Adapt to new(?) STUPID json format
#407
kedhammar
closed
9 months ago
0
Remove unused travis building and badge
#406
aanil
closed
9 months ago
0
Merge Run and Standard Run base classes to a single base class
#405
aanil
opened
9 months ago
0
Fix typo
#404
chuan-wang
closed
9 months ago
0
Initial PR, tests for the ONT transfer script
#403
kedhammar
closed
9 months ago
0
Hotfix of bugs
#402
chuan-wang
closed
9 months ago
1
Ignore runs in 3rd PromethION column
#401
kedhammar
closed
10 months ago
0
Run Anglerfish v0.6.0 with --lenient and --ont_barcodes options
#400
kedhammar
closed
10 months ago
0
Version V1.0.0
#399
chuan-wang
closed
9 months ago
4
More bug fix for rsync permission issue
#398
chuan-wang
closed
11 months ago
0
Improve run folder transfer
#397
chuan-wang
closed
11 months ago
0
tests for taca are not functional
#396
FranBonath
opened
11 months ago
0
enable taca to archive ONT runs
#395
FranBonath
closed
11 months ago
0
Fix bug with rsync permission issue
#394
chuan-wang
closed
11 months ago
0
Fix issues with starting Anglerfish
#393
kedhammar
closed
12 months ago
0
Remove redundant function cleanup_processing in cleanup.py
#392
aanil
closed
12 months ago
0
Support multiple project ID for run folder transfer
#391
chuan-wang
closed
1 year ago
0
Fix bug that NovaSeqXPlus date format cause error in writing pdc_archived timestamp
#390
chuan-wang
closed
1 year ago
0
Remove the temp change of creating links
#389
chuan-wang
closed
1 year ago
0
Minion renovation supplement
#388
kedhammar
closed
1 year ago
0
Fix bugs for encrypting and archiving runs on ngi-preproc
#387
chuan-wang
closed
1 year ago
0
MinION renovation
#386
kedhammar
closed
1 year ago
2
Next