issues
search
ShawHahnLab
/
chiimp
Computational, High-throughput Individual Identification through Microsatellite Profiling
GNU Affero General Public License v3.0
2
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Parsing ambiguity in primers & complex STR motifs?
#103
jmmccar
opened
5 months ago
2
Error in `[.data.frame`(obj, , cols_id, drop = FALSE) : undefined columns selected
#102
Sven-Winter
opened
9 months ago
1
Config and test cleanups
#101
ressy
closed
1 year ago
0
Switch test data object to a static .rda file instead of computing at package load time
#100
ressy
closed
1 year ago
0
Cleanup and report fixes for new configuration system
#99
ressy
closed
1 year ago
0
Configuration reorganization
#98
ressy
closed
1 year ago
0
Advanced primer handling features
#97
ressy
closed
1 year ago
0
load_dataset duplicate check should use make_entry_id helper
#96
ressy
opened
1 year ago
0
Tests using png("/dev/null") fail with bitmapType quartz
#94
ressy
opened
1 year ago
0
Release 0.4.1
#93
ressy
closed
1 year ago
1
Test cleanup
#92
ressy
closed
1 year ago
0
Make warnings display as they occur when running chiimp script
#91
ressy
closed
1 year ago
0
Check dataset spreadsheets for duplicate sample/replicate/locus combinations
#90
ressy
closed
1 year ago
0
Warnings should be shown closer to where they occurred
#89
ressy
closed
1 year ago
0
Check config files for unrecognized keys
#88
ressy
closed
1 year ago
0
load_dataset should complain about overlapping sample+locus+replicate combinations
#87
ressy
closed
1 year ago
0
Add filename field code to Linux desktop icon
#85
ressy
closed
2 years ago
0
CHIIMP.desktop on Linux should have file name field code
#84
ressy
closed
2 years ago
0
Handle one, zero, or unrecognized extra columns in tabulate_allele_names
#83
ressy
closed
2 years ago
0
Report fails with known genotypes supplied (tabulate_allele_names fails when given exactly one extra column)
#82
ressy
closed
2 years ago
0
Fix row ordering in genotype summary tables
#81
ressy
closed
2 years ago
0
Row ordering inconsistent for wide-format genotype summary tables with incomplete sample/locus combinations
#80
ressy
closed
2 years ago
0
Only apply labeling for untested sample/locus cases to appropriate columns
#79
ressy
closed
2 years ago
0
Labeling for untested sample/locus combinations is applied to non-locus table columns
#78
ressy
closed
2 years ago
0
Defining sample analysis options per-locus should be available
#77
ressy
opened
2 years ago
0
Release 0.4.0
#76
ressy
closed
2 years ago
1
Automatically find pandoc at run-time
#75
ressy
closed
2 years ago
0
Allow custom row names in load_csv
#74
ressy
closed
2 years ago
0
Report rendering fails with RStudio >= 2022.02 due to pandoc change
#73
ressy
closed
2 years ago
3
Make installer commands obey site-wide configuration
#72
ressy
closed
2 years ago
0
Installer commands should obey site-wide configuration
#71
ressy
closed
2 years ago
0
load_csv should accept row.names if given
#70
ressy
closed
2 years ago
0
Fix superfluous quotes in report HTML when rendered with newer pandoc
#69
ressy
closed
2 years ago
0
Report rendered with pandoc>=2.6 has quotes around title, author, and date
#68
ressy
closed
2 years ago
3
Report R and pandoc versions in CircleCI jobs
#67
ressy
closed
2 years ago
0
Handle missing data in histogram rendering
#66
ressy
closed
2 years ago
0
Histogram rendering doesn't handle missing data gracefully
#65
ressy
closed
2 years ago
0
Support labeling untested sample/locus combinations in genotype summary tables
#64
ressy
closed
2 years ago
0
Automatically create parent directories when saving tables
#63
ressy
closed
2 years ago
0
Make plot_dist_mat handle pheatmap arguments correctly
#62
ressy
closed
2 years ago
0
plot_dist_mat doesn't handle pheatmap arguments correctly
#61
ressy
closed
2 years ago
0
Test via CircleCI instead of Travis
#60
ressy
closed
2 years ago
0
sample_analysis_opts fraction.min is confusing
#59
ressy
opened
2 years ago
0
load_config should check for names not present in config.default
#58
ressy
closed
1 year ago
0
Migrate from Travis CI for automated testing
#57
ressy
closed
2 years ago
0
Release 0.3.1
#56
ressy
closed
4 years ago
0
Desktop icon has incorrect script path on Mac OS
#55
ressy
closed
4 years ago
2
Install should check for for cmd-line dev tools on Mac OS
#54
ressy
opened
4 years ago
0
save_csv should handle missing directories
#53
ressy
closed
2 years ago
0
Allow arbitrary columns in CSV helpers
#52
ressy
closed
4 years ago
0
Next