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Shians
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Glimma
Glimma R package
GNU Lesser General Public License v3.0
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Still written logCPM in expression description even when transform=FALSE
#180
amayer21
opened
5 months ago
0
Toggle header for glimmaMDS depending on the gene.selection argument
#179
jmacdon
opened
2 years ago
0
Specifying a second grouping as batch effect
#178
peterleary
opened
3 years ago
0
glimmaMDS/glimmaMD can't find local directories
#177
jdrnevich
opened
3 years ago
1
Devel
#176
Shians
closed
4 years ago
0
Values are rounded incorrectly
#175
sam-israel
opened
5 years ago
0
Allow fixing of y-axis in expression plot of MD plot
#174
Shians
opened
5 years ago
0
make glMDSPlot.DGEList's default prior.count = 2
#173
jdrnevich
closed
5 years ago
3
Allow expressions to only be stored for significant genes
#172
Shians
opened
5 years ago
0
Allow x-axis label rotation in expressions plot of MD plot
#171
Shians
opened
5 years ago
0
glMDPlot output empty html
#170
u9090
closed
5 years ago
5
Multiple contrasts broken for DGELRT
#169
Shians
opened
5 years ago
0
Devel
#168
Shians
closed
5 years ago
0
Allow sizes of sample expression points to change (maybe scale by sample weights)
#167
Shians
opened
6 years ago
0
Add volcano plot wrapper
#166
Shians
opened
6 years ago
1
Devel
#165
Shians
closed
6 years ago
0
sample assignment incorrect in glMDPlot 1.8.1 vs. 1.6.0
#164
jdrnevich
closed
6 years ago
2
Unhelpful failure in glMDPlot when group is not a vector
#163
Shians
opened
6 years ago
0
Devel
#162
Shians
closed
6 years ago
0
Merge level
#161
Shians
closed
6 years ago
1
glMDPlot's transform argument description needs to be changed
#160
jdrnevich
closed
6 years ago
1
bug in glMDPlot.default: internal function make_side_main_unique()
#159
jdrnevich
closed
6 years ago
1
Version bump
#158
Shians
closed
6 years ago
0
Devel
#157
Shians
closed
6 years ago
0
Devel
#156
Shians
closed
6 years ago
0
Update the data table with custom zoom
#155
sejmodha
opened
6 years ago
0
Devel
#154
Shians
closed
6 years ago
1
Add gene list word cloud function
#153
Shians
opened
6 years ago
0
Add links to gene IDs and symbols
#152
Shians
opened
6 years ago
0
Devel
#151
Shians
closed
6 years ago
1
Devel
#150
Shians
closed
6 years ago
1
Devel
#149
Shians
closed
6 years ago
1
Easy way to adjust order of groups in top right plot of glMDPlot?
#148
jdrnevich
opened
6 years ago
2
glMDplot changes numeric columns with NAs to character in bottom table
#147
jdrnevich
opened
6 years ago
2
wrong assignment of ids to values in glMDPlot() HTML
#146
assafwww
opened
6 years ago
0
glXYPlot changing the count values from ExpressionSet object
#145
foramashar
opened
6 years ago
1
Implement shared counts data
#144
Shians
opened
6 years ago
0
bug fix for removing bad data
#143
jdrnevich
closed
6 years ago
1
Add handling for when anno is a vector
#142
Shians
opened
7 years ago
0
Devel
#141
Shians
closed
7 years ago
1
Table in glMDPlot not showing all columns
#140
jdrnevich
closed
6 years ago
5
Request and bug in P.Values in glMDPlot
#139
jdrnevich
closed
7 years ago
2
top option does not change glMDSPlot results
#138
mueggeb
closed
6 years ago
2
Devel
#137
Shians
closed
7 years ago
1
Devel
#136
Shians
closed
7 years ago
1
Revert "Devel"
#135
Shians
closed
7 years ago
0
Devel
#134
Shians
closed
7 years ago
1
glMDSPlot not doing gene.selection = "common" correctly
#133
jdrnevich
closed
6 years ago
1
fixed bug in top in wrappers, added prior.count
#132
jdrnevich
closed
7 years ago
3
glMDSplot should invisibly return MDS values
#131
jdrnevich
opened
7 years ago
3
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