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Singular-Genomics
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singular-demux
Singular Genomics Demultiplexing Tool
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Pin and lock cross version
#66
theJasonFan
closed
8 months ago
0
Improving support for multi-segment multi-index
#65
theJasonFan
opened
8 months ago
0
Validate and design how multi-segment barcodes for multi-indexing runs are delimited.
#64
theJasonFan
opened
8 months ago
0
Throw warning when input fastq or prefix does not exist
#63
theJasonFan
opened
8 months ago
0
`+` delimited dual index barcodes, and arbitrary raw barcodes
#62
theJasonFan
closed
8 months ago
1
Change column names for per sample and per project metrics
#61
theJasonFan
closed
8 months ago
1
Implement dual index barcodes, delimited by `+`.
#60
theJasonFan
closed
8 months ago
6
Improve / change column names for per sample and per project metrics
#59
theJasonFan
closed
8 months ago
0
Improving metrics outputs to make them more self-explanatory
#58
theJasonFan
opened
8 months ago
1
Possible code improvements for tests
#57
theJasonFan
opened
8 months ago
0
Clippy throwing errors and warnings for tests
#56
theJasonFan
opened
8 months ago
0
Opts::default() and cli defaults do not agree
#55
theJasonFan
opened
8 months ago
0
[bugfix] Unit tests and fixes to Matchers
#54
theJasonFan
closed
8 months ago
2
fix: fix description of --min-delta in readme
#53
nh13
closed
8 months ago
0
Min delta compare
#52
jiangweiyao
closed
8 months ago
2
Readme edits
#51
jiangweiyao
closed
11 months ago
0
Compare min-delta to minimum distance between samples
#50
jiangweiyao
opened
11 months ago
1
Change min delta
#49
jiangweiyao
closed
11 months ago
4
[bugfix] the output undetermined file should be named based on --lane
#48
nh13
closed
1 year ago
0
[feat] update the ordinal after coalescing
#47
nh13
closed
1 year ago
0
Bugfix/specify lane ordinal sorting
#46
nh13
closed
1 year ago
0
[feat] allow the auto-detected read structure to be overriden
#45
nh13
closed
1 year ago
0
Bump spin from 0.9.4 to 0.9.8
#44
dependabot[bot]
opened
1 year ago
0
[ci] add support for building static binaries in GitHub Actions
#43
nh13
closed
1 year ago
0
[feat] use lane from sample metadata in filename or --lanes
#42
nh13
closed
1 year ago
0
[doc] use --locked with cargo install
#41
nh13
closed
1 year ago
0
Use the rust-toolchain.toml in github actions
#40
nh13
closed
1 year ago
0
Change run_metrics.tsv to metrics.tsv in the README
#39
nh13
closed
1 year ago
0
docs: synchronize argument ordering in the README and usage/help
#38
nh13
closed
1 year ago
2
Bump bumpalo from 3.10.0 to 3.12.0
#37
dependabot[bot]
closed
1 year ago
0
[feat] add an option to only process specific lanes
#36
nh13
closed
1 year ago
1
[bugfix] only check read structures for sample barcodes if demultiple…
#35
nh13
closed
1 year ago
0
Change back fastqs command line to be required after updating clap
#34
nh13
opened
1 year ago
0
Handle when --fastqs is specified on the CLI while CLI options are also in a sample sheet
#33
nh13
closed
1 year ago
0
Evaluate potential speed up when using pooled-writer
#32
nh13
opened
1 year ago
0
Feature/project level metrics
#31
nh13
closed
1 year ago
0
[feat] add an option to specify the file name prefix for all metric f…
#30
nh13
closed
1 year ago
0
[feat] improve documentation of the order of auto-detected reads
#29
nh13
closed
1 year ago
0
[feat] add an option to use the sample barcode in the FASTQ header
#28
nh13
closed
1 year ago
0
[feat] Check that read pairs have the same name
#27
nh13
closed
1 year ago
0
Check if read names match in paired end reads
#26
jiangweiyao
closed
1 year ago
0
Support demultiplexing across multiple lanes
#25
nh13
closed
1 year ago
0
Input can be a path prefix
#24
nh13
closed
1 year ago
0
If project exists in the Sample Sheet, append to the output directory
#23
nh13
closed
1 year ago
0
Update the output filename pattern
#22
nh13
closed
2 years ago
0
Feature/sample sheet
#21
nh13
closed
1 year ago
0
installation revisions
#20
jiangweiyao
closed
2 years ago
0
Updating release docs
#19
nh13
closed
2 years ago
1
Make quality-mask-threshold exclusive. I.e. if a value of 10 is prov…
#18
tfenne
closed
2 years ago
0
Per-read quality mask thresholds, and avoid masking non-template bases
#17
tfenne
closed
2 years ago
0
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