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SoundAg
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sounDMR
Differentially methylated region analysis from Oxford Nanopore Technologies data
Apache License 2.0
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Error while creating Megaframe such as Methyl_bed
#69
sachingadakh
closed
1 week ago
3
Whole_genome analysis problem
#68
PraddyumnaR
closed
4 days ago
8
Creating the ZoomFrame!!!Can you help me to solve this error
#67
saky7009
closed
2 weeks ago
5
Knockout
#66
saky7009
closed
2 months ago
0
methyl_summary generation problem
#65
PraddyumnaR
closed
1 week ago
30
Problem in creating dmr_obj
#64
PraddyumnaR
closed
2 months ago
1
error in create_methyl_summary()
#63
katieskinner98
closed
2 months ago
5
Adding step4 wrapper
#62
kprabhu-soundag
opened
5 months ago
1
updating Readme with a note on dockerizing
#61
kprabhu-soundag
closed
5 months ago
1
Pyandrdocker
#60
kprabhu-soundag
closed
6 months ago
0
Pyandrdocker
#59
sbassi
closed
6 months ago
1
Update changepoints
#58
jcolicchio-soundag
closed
7 months ago
0
Update Sound_DMR.R
#57
jcolicchio-soundag
closed
7 months ago
1
Whole genome patch
#56
kprabhu-soundag
closed
7 months ago
0
Whole genome patch
#55
tcairns-soundag
closed
8 months ago
0
Error in Whole genome bedmethyl processing step
#54
BeatrizFaustino
closed
5 months ago
14
Error in library(sounDMR) : there is no package called ‘sounDMR'
#53
BeatrizFaustino
closed
10 months ago
7
updating wrapper script for filter_NAs
#52
kprabhu-soundag
closed
10 months ago
0
Updated the script and built a new package for split_by_chunk
#51
kprabhu-soundag
closed
11 months ago
0
Made changes to dockerfile and added wrapper for split_by_chunk
#50
kprabhu-soundag
closed
11 months ago
0
Updating split_by_chromosome function
#49
kprabhu-soundag
closed
11 months ago
2
Whole genome chgpt dmr
#48
tcairns-soundag
closed
10 months ago
2
group_DMR bugfix and minor enhancements
#47
kprabhu-soundag
closed
11 months ago
1
generate_megaframe optimized to run faster
#46
kprabhu-soundag
closed
11 months ago
0
Added a few lines about the whole genome analysis
#45
kprabhu-soundag
closed
1 year ago
0
Fixed bug in exporting split_by_chromosome function
#44
tcairns-soundag
closed
1 year ago
0
Issue using split_by_chromosome
#43
nickyph
closed
1 year ago
5
Bug fix in the generate_megaframe and generate methylframe
#42
kprabhu-soundag
closed
1 year ago
1
Package build
#41
kprabhu-soundag
closed
1 year ago
0
Update README.md
#40
jcolicchio-soundag
closed
1 year ago
0
Add sounDMR logo to package
#39
mflashman-soundag
closed
1 year ago
0
Added bug fixes to some of the functions causing memory leak
#38
kprabhu-soundag
closed
1 year ago
2
function to split chroms and read only needed columns in generate_meg…
#37
sbassi
closed
1 year ago
0
Workflow Patch Fix
#36
tcairns-soundag
closed
1 year ago
1
Delete LICENSE.md
#35
mflashman-soundag
closed
1 year ago
0
Add Apache License, update code base to standard package structure, and create new release.
#34
mflashman-soundag
closed
1 year ago
5
Minor improvements
#33
tcairns-soundag
closed
1 year ago
0
Release Review - Jul 13, 2023
#32
mflashman-soundag
closed
1 year ago
0
Adding updates to the README
#31
tcairns-soundag
closed
1 year ago
0
Updated Readme to include info for Methylframe
#30
kprabhu-soundag
closed
1 year ago
0
Added the filtering NAs code outside of zoomframe and added a few changes
#29
kprabhu-soundag
closed
1 year ago
0
Update Sound_DMRv2.R
#28
jcolicchio-soundag
closed
1 year ago
0
Fixed bug in adding column names
#27
tcairns-soundag
closed
1 year ago
0
Fix methyl summary cols
#26
tcairns-soundag
closed
1 year ago
0
Methyl frame updates
#25
tcairns-soundag
closed
1 year ago
0
Megaframe zoomframe changes
#24
kprabhu-soundag
closed
1 year ago
0
Added changes to the code to enable users to choose between Megaframe and zoomframe
#23
kprabhu-soundag
closed
1 year ago
1
DMRscore Updates and Flexibility improves
#22
jcolicchio-soundag
closed
1 year ago
0
Methyl summary col updates
#21
tcairns-soundag
closed
1 year ago
1
Subset improvements
#20
tcairns-soundag
closed
1 year ago
0
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