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StanfordBioinformatics
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trellis-mvp-functions
Trellis serverless data management framework for variant calling of VA MVP whole-genome sequencing data.
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Bump urllib3 from 1.26.18 to 1.26.19 in /functions/register-blob-deleted
#56
dependabot[bot]
opened
2 weeks ago
0
Bump gunicorn from 19.9.0 to 22.0.0 in /functions/check-dstat
#55
dependabot[bot]
opened
2 months ago
0
Bump urllib3 from 1.26.17 to 1.26.18 in /functions/register-blob-deleted
#54
dependabot[bot]
closed
8 months ago
0
Bump urllib3 from 1.26.17 to 1.26.18 in /functions/register-sample-snvqa-status
#53
dependabot[bot]
closed
8 months ago
0
Bump urllib3 from 1.26.17 to 1.26.18 in /functions/db-query-index
#52
dependabot[bot]
closed
8 months ago
0
Bump urllib3 from 1.26.5 to 1.26.17 in /functions/register-sample-snvqa-status
#51
dependabot[bot]
closed
9 months ago
0
Bump urllib3 from 1.26.5 to 1.26.17 in /functions/register-blob-deleted
#50
dependabot[bot]
closed
9 months ago
0
Bump urllib3 from 1.26.5 to 1.26.17 in /functions/db-query-index
#49
dependabot[bot]
closed
9 months ago
0
Bump flask from 1.0.2 to 2.3.2 in /functions/check-dstat
#48
dependabot[bot]
closed
1 year ago
0
Quality control data is missing from CloudSQL database
#47
pbilling
opened
1 year ago
1
Represent data stores in metadata store
#46
pbilling
opened
1 year ago
5
Error 403 when trying to add Personalis Sequencing JSON to database
#45
pbilling
closed
1 year ago
2
Bump urllib3 from 1.24.2 to 1.26.5 in /functions/register-sample-snvqa-status
#44
dependabot[bot]
closed
1 year ago
0
Bump urllib3 from 1.24.2 to 1.26.5 in /functions/register-blob-deleted
#43
dependabot[bot]
closed
1 year ago
0
Cannot install urllib3 because of conflicting dependencies
#42
pbilling
closed
1 year ago
1
Newly delivered samples are not being added to database
#41
pbilling
closed
1 year ago
13
Overhaul the process of creating job nodes
#40
pbilling
opened
1 year ago
8
Trellis v1.3 status overview
#39
pbilling
opened
1 year ago
1
Investigating using Batch to perform virtual machine jobs instead of Dsub
#38
pbilling
opened
1 year ago
0
Add version visibility for config files
#37
pbilling
opened
1 year ago
1
Write standard job launcher function
#36
pbilling
opened
1 year ago
13
Should I refactor launch functions into single function?
#35
pbilling
closed
1 year ago
1
Write tests for launch-fastq-to-ubam
#34
pbilling
closed
1 year ago
1
Cloud Build is failing but build details show "Successful"
#33
pbilling
closed
1 year ago
5
Refactor fastq-to-ubam to use new trellisdata message classes
#32
pbilling
closed
1 year ago
1
Add flag to db-query to always reload queries in dev env
#31
pbilling
opened
1 year ago
1
Add HAS_MATE_PAIR relationship between paired end fastqs
#30
pbilling
closed
1 year ago
2
MergeVCFs generated GVCFs without indexes
#29
pbilling
opened
2 years ago
0
Query to relate JobRequest to Job failing
#28
pbilling
opened
2 years ago
2
Ubam nodes were not added to the database
#27
pbilling
closed
2 years ago
7
Ubam nodes not related to FastqToUbam jobs
#26
pbilling
closed
2 years ago
5
Bump urllib3 from 1.24.2 to 1.26.5 in /functions/launch-gatk-5-dollar
#25
dependabot[bot]
closed
2 years ago
1
Bump urllib3 from 1.24.2 to 1.26.5 in /functions/create-blob-node
#24
dependabot[bot]
closed
2 years ago
1
Bump urllib3 from 1.24.2 to 1.26.5 in /functions/check-triggers
#23
dependabot[bot]
closed
2 years ago
1
Bump urllib3 from 1.24.3 to 1.26.5 in /functions/db-query-index
#22
dependabot[bot]
closed
2 years ago
1
Bump urllib3 from 1.24.2 to 1.26.5 in /functions/launch-fastq-to-ubam
#21
dependabot[bot]
closed
2 years ago
1
Bump urllib3 from 1.24.3 to 1.26.5 in /functions/db-query
#20
dependabot[bot]
closed
2 years ago
1
Bump pyyaml from 5.1.1 to 5.4 in /functions/db-query-index
#19
dependabot[bot]
closed
3 years ago
1
Bump pyyaml from 5.1.1 to 5.4 in /functions/db-query
#18
dependabot[bot]
closed
3 years ago
1
Add VM disk size(s) to Neo4j database
#17
pbilling
closed
4 years ago
1
Relationship queries have to be routinely retried
#16
pbilling
opened
4 years ago
1
Distinguish function group and update database documentation
#15
xingziye
closed
4 years ago
0
Cloud build triggers template
#14
xingziye
closed
4 years ago
2
Develop docs and screenshots
#13
xingziye
closed
4 years ago
0
log-delete-instance sink catches non-Trellis VM metadata
#12
pbilling
opened
4 years ago
0
Database queries taking longer than 1s to complete
#11
pbilling
opened
4 years ago
0
db-query messages routinely getting stuck in Pub/Sub query for 10 minutes
#10
pbilling
opened
4 years ago
0
Launching high frequency of duplicate GATK workflows
#9
pbilling
closed
4 years ago
1
Gsutil parallel composite upload temp files being written to GCS
#8
pbilling
opened
4 years ago
1
Cromwell docker pull failed
#7
pbilling
closed
4 years ago
2
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