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Swarbricklab-code
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BrCa_cell_atlas
Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
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BAM files
#30
elliewith
opened
5 months ago
1
Gene Positions data for running inferCNV.
#29
purvapruthi
opened
11 months ago
1
Garnett subtypes
#28
miguecass
opened
1 year ago
0
Reproducing SC subtype calls
#27
miguecass
opened
1 year ago
3
Request for providing RData files for major,minor,subset celltypes
#26
tahseen-igib
opened
1 year ago
0
Request for providing script for running stereoscope for spatial data
#25
tahseen-igib
opened
1 year ago
0
Question about difference between AUcell & other geneset enrichment tools
#24
tahseen-igib
closed
1 year ago
1
Request for gene_clusters.txt file for AUCell analysis for spatial data
#23
tahseen-igib
closed
1 year ago
1
Potentially application of ecotyper?
#22
WangKang-Leo
closed
1 year ago
1
Request for Original H&E Images for Spatial Transcriptomics Slides
#21
YuxuanXie1214
opened
1 year ago
3
Deconvolution file corresponding to 1160920F Patient counts from the zenodo repository.
#20
ZheFrench
opened
1 year ago
2
About the "filtered_count_matrices.tar.gz" download on zenodo
#19
lhyNB
closed
2 years ago
2
Request to Meta data csv file
#18
pratapstat
closed
2 years ago
2
CITE-seq data filtering
#17
BMBlobner
opened
2 years ago
1
scSubtype related code，Is it possible to call directly？
#16
zhangjl-work
opened
2 years ago
7
Batch Corrected Count Matrix
#15
Ethan-Earlie
opened
2 years ago
3
Single Cell Count
#14
Ethan-Earlie
closed
2 years ago
3
Identifying thresholds for cancer cell detection with medoids clustering
#13
RegnerM2015
closed
2 years ago
2
Code about the gene module
#12
JulieBaker1
opened
2 years ago
0
sd_amplifier set to 1.3 for de-noising?
#11
RegnerM2015
closed
2 years ago
2
tif or jpg format of the HE image data
#10
JunMa11
closed
2 years ago
1
The result files of Stereoscope are missing
#9
yewero
closed
2 years ago
1
How was GSE176078_Wu_etal_2021_BRCA_scRNASeq.tar.gz created?
#8
RegnerM2015
closed
2 years ago
2
Question about Pseudobulk
#7
ZeroLi-Bio
closed
2 years ago
1
How did you combine the pseudobulk and TCGA before hierarcheal clustering?
#6
ZeroLi-Bio
closed
2 years ago
1
Generating pseudobulk
#5
inofechm
closed
2 years ago
2
Can't find codes for subclustering of epithelial cells
#4
FlyPythons
opened
2 years ago
0
missing h5 files from Zenodo
#3
Dantferno
closed
2 years ago
9
Looking for input file
#2
inofechm
closed
2 years ago
1
Can't find codes
#1
HBioquant
closed
2 years ago
1