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Sydney-Informatics-Hub
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Shotgun-Metagenomics-Analysis
Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
GNU General Public License v3.0
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assemble_make_input.sh
#33
ozge81
opened
1 month ago
2
problem finding modules
#32
AndreaQ7
opened
4 months ago
1
Add files via upload
#31
fancyge
closed
1 year ago
0
Add files via upload
#30
fancyge
closed
1 year ago
0
Add files via upload
#29
fancyge
closed
1 year ago
0
Add files via upload
#28
fancyge
closed
1 year ago
0
Bio test data branch
#27
calizilla
closed
2 years ago
0
Create PLOT_ARG_pheatmap.R
#26
fancyge
closed
1 year ago
1
Create PLOT_DAA.R
#25
fancyge
closed
1 year ago
1
Add files via upload
#24
fancyge
closed
2 years ago
0
Development
#23
tracychew
closed
2 years ago
0
Update changes within main onto development branch
#22
calizilla
closed
2 years ago
0
R plots
#21
tracychew
closed
2 years ago
0
Development
#20
tracychew
closed
2 years ago
0
add gene pred
#19
tracychew
closed
2 years ago
0
Downstream Upgrades v1.0
#18
hlydecker
closed
2 years ago
0
Add examples of downstream analysis and vis
#17
hlydecker
closed
2 years ago
0
Create workflow diagram
#16
calizilla
closed
2 years ago
1
Create table of contents
#15
calizilla
closed
2 years ago
1
Add group-level output for 'Filter ARGs by coverage and identity'
#14
calizilla
closed
2 years ago
1
Order of markdup within pipeline
#13
calizilla
opened
2 years ago
1
Assembly output directories
#12
calizilla
closed
2 years ago
1
Update README.md
#11
hlydecker
closed
2 years ago
1
Add resistome
#10
calizilla
closed
2 years ago
1
Add gene prediction
#9
calizilla
closed
2 years ago
1
Add functional profiling
#8
calizilla
closed
2 years ago
1
Add insertion sequence element discovery
#7
calizilla
closed
2 years ago
1
Add antimicrobial resistance genes analysis
#6
calizilla
closed
2 years ago
1
Add abundance estimation
#5
calizilla
closed
2 years ago
1
Add speciation
#4
calizilla
closed
2 years ago
1
Host Contamination
#3
hlydecker
closed
2 years ago
1
Downstream Analysis Feature Pack
#2
hlydecker
opened
2 years ago
2
Create LICENSE
#1
tracychew
closed
2 years ago
0