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SydneyBioX
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scMerge
Statistical approach for removing unwanted variation from multiple single-cell datasets
https://sydneybiox.github.io/scMerge/
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using scMerge2 with count matrix Seurat object
#41
martina811
opened
5 months ago
1
newest matrix version gives error
#40
satzel
opened
10 months ago
0
how to accelarate the scMerge2 process
#39
xflicsu
opened
10 months ago
3
Atlas level integration
#38
ConDem94
closed
1 year ago
1
Error when rerun the vignette
#37
QianLLLL
closed
1 year ago
0
how to prepare the input data form a Seurat object
#36
xinmiaoyan
closed
1 year ago
1
How to set the kmeans parameters
#35
YOU-k
closed
1 year ago
0
detail about ESC dataset analysis
#34
wupeng2
closed
1 year ago
0
Error message: Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘assay’ for signature ‘"character", "character"’
#33
legeinei123
closed
3 years ago
1
scRUVIII Contrasts Error
#32
DarioS
closed
3 years ago
1
Error in neighbour_batch2[neighbour_batch1[l]] : invalid subscript type 'list'
#31
yuyuanyuana
closed
2 years ago
1
Selecting all cells : replicate_prop = 1
#30
CodeInTheSkies
closed
1 year ago
1
getting Error in pca_current[, seq_len(10)] : subscript out of bounds
#29
MartinLoza
opened
4 years ago
1
any suggested cutoff for stably expressed genes, segIdx
#28
wangmhan
closed
1 year ago
8
Problems running scMerge: Error in ctl2[ctl] <- TRUE : invalid subscript type 'list'
#27
shaln
closed
4 years ago
2
Allowance of specifying the colname for "batch" annotation
#26
mvfki
closed
4 years ago
3
What would be the best strategy to integrate multiple datasets that only have limited overlapping population
#25
mzhibo
closed
1 year ago
2
Request for a detailed vignette for beginners to try scMerge
#24
mzhibo
closed
3 years ago
2
SEG random initialisation error
#23
kevinwang09
closed
4 years ago
1
can I force installation on a R 3.5 from github?
#22
agranado
closed
5 years ago
2
Syntax issue on line 63
#21
kant
closed
5 years ago
0
Syntax issue on line 63
#20
kant
closed
5 years ago
0
scMerge now DelayedArray outputs
#19
kevinwang09
closed
5 years ago
0
Further integrations with BiocSingular and BiocParallel
#18
kevinwang09
closed
5 years ago
0
Biocsing
#17
kevinwang09
closed
5 years ago
0
scMerge::sce_cbind error with method = "union"
#16
zezhuo
closed
5 years ago
6
Intergration with DE analysis
#15
crotoc
closed
5 years ago
7
Tire kicking for use in the OSCA book
#14
LTLA
closed
1 year ago
10
Unexpected error in specifying kmeansK parameters
#13
makimenkova
closed
5 years ago
7
Feature request: Interactive plotting function
#12
kevinwang09
opened
5 years ago
1
Using scMerge with R 3.5
#11
kevinwang09
closed
5 years ago
1
should the value of the scSEG index be low or high to consider that a gene is a stable expressed gene ?
#10
aoumess
closed
5 years ago
3
Accepting other matrix classes (e.g. SparseMatrix/DelayedArray)
#9
kevinwang09
closed
5 years ago
3
Using BiocSingular for SVD operations
#8
kevinwang09
closed
1 year ago
2
Cannot download processed data in the Case Study page
#7
genecell
closed
5 years ago
5
Mixing accuracy
#6
elimereu
closed
5 years ago
1
Bioconductor support
#5
robertamezquita
closed
5 years ago
2
Error running unsupervised & semi-supervised scMerge
#4
AswinSSoman
closed
5 years ago
5
Highly Variable Genes and clustering
#3
elimereu
closed
5 years ago
4
Cannot install in macOS
#2
galanisl
closed
5 years ago
3
problem during the RUV normalisation
#1
elimereu
closed
5 years ago
2