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SysBioChalmers
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Sco-GEM
The consensus GEM for Streptomyces coelicolor -
https://sysbiochalmers.github.io/Sco-GEM/
Creative Commons Attribution 4.0 International
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fix: previous commit didn't cover all new reactions.
#96
sulheim
closed
4 years ago
0
fix: added exchange-reactions lower bound set to 0
#95
sulheim
closed
4 years ago
0
Feat/plot timeseries
#94
sulheim
closed
4 years ago
0
Feat/ecmodel analysis
#93
sulheim
closed
4 years ago
0
Feat/ec model
#92
sulheim
closed
4 years ago
0
chore: rename model files
#91
sulheim
closed
4 years ago
0
fix: direction of ferredoxin-NAPD reductase
#90
sulheim
closed
3 years ago
0
fix: alpha and beta variants of glucose-6-phosphate
#89
sulheim
closed
3 years ago
2
feat: include cofactor information from Coze et al., 2013
#88
sulheim
closed
3 years ago
0
fix: direction of ICDhyr (isocitrate dehydrogenase)
#87
sulheim
closed
3 years ago
2
fix: add exchange reaction for cpk / coelimycin
#86
sulheim
closed
5 years ago
0
fix: cpk exchange reaction
#85
sulheim
closed
5 years ago
0
fix: reaction bounds of atp-reactions and two cpk-reactions
#84
sulheim
closed
5 years ago
1
fix: deleted genes without annotation
#83
sulheim
closed
5 years ago
0
fix: remove non gene-associated reactions causing loops
#82
sulheim
closed
5 years ago
0
feat: review sink reactions
#81
sulheim
opened
5 years ago
0
feat: dead end / orphan metabolites and blocked reactions
#80
sulheim
opened
5 years ago
2
feat: reaction mass balance and metabolite charge and formula
#79
sulheim
opened
5 years ago
1
docs: print subsystem per model origin
#78
sulheim
closed
5 years ago
1
Add myo-inositol catabolism genes to knock-out tests
#77
sulheim
opened
5 years ago
0
Chore/travis
#76
sulheim
closed
5 years ago
0
Fix/refactor/ mmy naming
#75
sulheim
closed
5 years ago
0
refactor: paths in reconstruct - script
#74
sulheim
closed
5 years ago
0
docs: downgrade cobrapy to 0.13.4
#73
sulheim
closed
5 years ago
0
Feat/subsystem annotation
#72
sulheim
closed
5 years ago
0
Fix/transporters
#71
tjasakumelj
closed
5 years ago
1
Fix/transporters
#70
tjasakumelj
closed
4 years ago
7
scoGEM 1.0
#69
sulheim
closed
5 years ago
0
scoGEM 1.0
#68
sulheim
closed
5 years ago
0
feat: ecModel
#67
edkerk
closed
5 years ago
2
feat: subsystem annotations
#66
sulheim
closed
5 years ago
3
docs: link repo to Zenodo
#65
sulheim
closed
3 years ago
2
feat: Name cpk genes
#64
sulheim
closed
3 years ago
0
Feat/doi annotations
#63
sulheim
closed
5 years ago
1
fix: Invalide KEGG ids
#62
sulheim
closed
3 years ago
0
Feat/rate estimation
#61
sulheim
closed
5 years ago
2
Feat/rate estimation
#60
sulheim
closed
5 years ago
0
Chor/clean files
#59
sulheim
closed
5 years ago
0
docs: adds misc files for completeness
#58
sulheim
closed
5 years ago
0
Feat/merge sco4
#57
sulheim
closed
5 years ago
0
feat: use transposon-data to improve model
#56
sulheim
opened
5 years ago
0
Fix/reversibility
#55
sulheim
closed
5 years ago
1
feat: review reaction bounds
#54
sulheim
closed
5 years ago
6
fix/refactor: removed model import
#53
sulheim
closed
5 years ago
0
Docs/python requirements
#52
sulheim
closed
5 years ago
0
fix: complex grRules
#51
edkerk
closed
5 years ago
3
feat: expand the calcium-dependent antibiotic pathway
#50
sulheim
opened
5 years ago
0
Fix/annotations
#49
sulheim
closed
5 years ago
2
feat: include find energy generating cycles in the tests
#48
sulheim
opened
5 years ago
1
Feat/tests
#47
sulheim
closed
5 years ago
1
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