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TCP-Lab
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x.FASTQ
Bash wrapper modules for the remote analysis of RNA-Seq data, with persistency features.
MIT License
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GEO to ENA ID conversion can fail in some cases
#28
MrHedmad
opened
2 weeks ago
0
`metaharvest` inaccurately renames metadata headings retrieved from ENA
#27
Feat-FeAR
opened
4 months ago
0
Make background execution of the main statements optional to enable pipelining.
#26
Feat-FeAR
opened
6 months ago
1
Consider extending gene annotation by `countFASTQ`/`assembler.R` to mouse (and maybe other) models.
#25
Feat-FeAR
closed
5 months ago
1
Add Docker support for containerization and reproducibility
#24
Feat-FeAR
opened
7 months ago
0
Add QualiMap tool as a QC option for `qcFASTQ` module
#23
Feat-FeAR
opened
7 months ago
0
Use metadata for default ID determination and assignment
#22
Feat-FeAR
opened
7 months ago
0
Add support for checking download hashes
#21
MrHedmad
closed
7 months ago
1
Reform harvest
#20
Feat-FeAR
closed
8 months ago
1
Make repository public
#19
MrHedmad
closed
7 months ago
1
Add execution permissions to worker scripts
#18
MrHedmad
closed
8 months ago
0
Wrong permissions on workers
#17
MrHedmad
closed
8 months ago
0
Add more precise unique line filtering
#16
MrHedmad
closed
8 months ago
0
`x.fastq -r` command crashes when it doesnt find the searched version pattern
#15
Feat-FeAR
closed
8 months ago
1
Make anqfastq -p less verbose
#14
MrHedmad
closed
8 months ago
1
`metaharvest` does not handle well paired-end download URLs
#13
MrHedmad
closed
8 months ago
2
Drop figlet requirement (#10)
#12
MrHedmad
closed
8 months ago
2
Add the --raw option to `countfastq.sh`
#11
MrHedmad
closed
8 months ago
0
`figlet` is required but not documented as a requirement
#10
MrHedmad
closed
8 months ago
2
Add an option to not include statistic name to column names when running `countFASTQ`
#9
MrHedmad
closed
8 months ago
0
Add `metaharvester`
#8
MrHedmad
closed
8 months ago
4
Consider using `git lfs`
#7
MrHedmad
opened
9 months ago
0
The `hostname` command might not be always installed
#6
MrHedmad
closed
8 months ago
2
Add an -F option to `getfastq` for the direct download of the full study
#5
Feat-FeAR
closed
8 months ago
1
Bad merging strategy in the assembly of count matrices
#4
Feat-FeAR
closed
9 months ago
1
Make `anqfastq` check the current processes beforehand
#3
Feat-FeAR
closed
1 year ago
1
Quality Trimming Implementation
#1
Feat-FeAR
closed
1 year ago
1