issues
search
TheJacksonLaboratory
/
Phenomiser
Phenotype-based Diagnosis Tool for Rare Diseases
6
stars
4
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Query option takes too long
#52
themkdemiiir
closed
1 year ago
1
Update pom.xml
#51
ldingemans
closed
1 year ago
0
Installation with maven fails
#50
ldingemans
opened
1 year ago
1
Precompute not being done when both OMIM and ORPHA passed as databases
#49
namratasp20
opened
2 years ago
2
Creating phenomiser-cli.jar and docker images for phenomiser
#48
namratasp20
closed
2 years ago
8
Bump junit from 4.12 to 4.13.1
#47
dependabot[bot]
opened
3 years ago
0
Phenopacket
#46
pnrobinson
closed
4 years ago
2
Develop
#45
kingmanzhang
closed
5 years ago
0
checkout this paper
#44
kingmanzhang
opened
5 years ago
0
A logger file has been added.
#43
vidarmehr
closed
5 years ago
1
Fix the issue
#42
vidarmehr
closed
5 years ago
1
Phenopacket
#41
kingmanzhang
closed
5 years ago
0
test query with Phenopackets
#40
kingmanzhang
opened
5 years ago
3
batch query
#39
kingmanzhang
closed
5 years ago
2
fix log4j error
#38
kingmanzhang
opened
5 years ago
0
no output file for more than 10 HP query terms
#37
vidarmehr
closed
5 years ago
6
Develop
#36
kingmanzhang
closed
5 years ago
0
addTermImprecision implementation not matching description
#35
kingmanzhang
closed
5 years ago
9
passing random seed not completely working yet
#34
kingmanzhang
opened
5 years ago
0
Gridsearchloop
#33
kingmanzhang
closed
5 years ago
0
Gridsearchloop
#32
kingmanzhang
closed
5 years ago
0
Fix expansion error
#31
kingmanzhang
closed
5 years ago
1
modularize branch
#30
vidarmehr
closed
5 years ago
1
change MTC as a function variable
#29
kingmanzhang
closed
5 years ago
1
divide it into modules
#28
kingmanzhang
closed
5 years ago
0
Develop
#27
kingmanzhang
closed
5 years ago
0
Exclude no annotation diseases
#26
kingmanzhang
closed
5 years ago
2
grid search (precise and imprecise)
#25
vidarmehr
closed
5 years ago
23
grid search
#24
vidarmehr
closed
5 years ago
0
remove parent terms in query
#23
kingmanzhang
closed
5 years ago
3
grid search iteration improvement
#22
kingmanzhang
closed
5 years ago
3
diseases with identical p value should have same rank
#21
kingmanzhang
closed
5 years ago
5
reduce memory requirement
#20
kingmanzhang
closed
5 years ago
1
exclude no annotation diseases
#19
kingmanzhang
closed
5 years ago
16
fixing indices of the rank matrix
#18
vidarmehr
closed
5 years ago
5
Jcommander
#17
kingmanzhang
closed
5 years ago
0
simulate only with diseases that have score distributions
#16
kingmanzhang
closed
5 years ago
2
Skip score distributions for >10 terms
#15
kingmanzhang
closed
5 years ago
1
Modified grid search now reflecting cases with all possible random no…
#14
kingmanzhang
closed
5 years ago
0
Error in deserializing score distribution file
#13
vidarmehr
closed
5 years ago
3
No disease with rank 1 in grid search!
#12
vidarmehr
closed
5 years ago
4
Phenol 1.3.3
#11
kingmanzhang
closed
5 years ago
0
jcommander refactor
#10
kingmanzhang
closed
5 years ago
0
difference in output of the online phenomiser and the code
#9
vidarmehr
closed
5 years ago
0
implement grid search
#8
kingmanzhang
closed
5 years ago
0
update
#7
pnrobinson
closed
5 years ago
0
similarity score symmetry
#6
kingmanzhang
closed
5 years ago
1
cache granularly
#5
kingmanzhang
closed
5 years ago
1
Develop
#4
kingmanzhang
closed
5 years ago
0
clean, refactor, and document
#3
kingmanzhang
closed
5 years ago
0
Next