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TheJacksonLaboratory
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diachromatic
Diachromatic is a Java application for preprocessing and quality control of Hi-C and CHi-C data.
https://diachromatic.readthedocs.io/en/latest/
GNU General Public License v3.0
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Bump guava from 31.1-jre to 32.0.0-jre
#165
dependabot[bot]
closed
9 months ago
2
Develop
#164
pnrobinson
closed
9 months ago
2
Finalize the pages workflow.
#163
ielis
closed
1 year ago
0
Setup github.io docs
#162
ielis
closed
1 year ago
0
Bump htsjdk from 3.0.0 to 3.0.1
#161
dependabot[bot]
closed
1 year ago
1
Help message needs to be revised
#160
hansenp
closed
1 year ago
1
WARNING: sun.reflect.Reflection.getCallerClass is not supported
#159
hansenp
closed
1 year ago
1
Warnings when building due to overlapping classes and resources
#158
hansenp
opened
2 years ago
1
Badreads
#157
pnrobinson
closed
2 years ago
6
Develop
#156
pnrobinson
closed
2 years ago
1
Bump guava from 23.6-jre to 29.0-jre
#155
dependabot[bot]
closed
3 years ago
2
-bsu option not included in list of all arguments on Read The Docs
#154
hansenp
closed
1 year ago
1
cleanup
#153
pnrobinson
closed
2 years ago
1
bowtie2 error
#152
pnrobinson
closed
1 year ago
12
switch cli interface to picocli
#151
pnrobinson
closed
2 years ago
1
MapPairsTest
#150
pnrobinson
closed
1 year ago
2
upgrade to junit 5
#149
pnrobinson
closed
4 years ago
1
Bump junit from 4.12 to 4.13.1
#148
dependabot[bot]
closed
4 years ago
1
Omni-C compatibility
#147
dabitz
closed
1 year ago
1
Bump guava from 23.6-jre to 24.1.1-jre
#146
dependabot[bot]
closed
4 years ago
0
Ensembl output format
#145
pnrobinson
closed
4 years ago
1
WashU output format
#144
pnrobinson
closed
1 year ago
1
ensure maven package makes stand-alone app
#143
pnrobinson
closed
5 years ago
2
Update main.css
#142
iimpulse
closed
5 years ago
2
Develop
#141
hansenp
closed
5 years ago
1
Re-ligation coefficient (RLC)
#140
pnrobinson
closed
5 years ago
2
reformating chart in alignment statistics
#139
pnrobinson
closed
5 years ago
0
Alignment statistics
#138
pnrobinson
closed
5 years ago
3
Truncation statistics
#137
pnrobinson
closed
5 years ago
1
Iss 131 add explanatory html text
#136
pnrobinson
closed
5 years ago
1
NullPointerException for align step with hg38
#135
hansenp
closed
5 years ago
1
Bugfix/first section 133
#134
iimpulse
closed
5 years ago
0
CSS for sample-table
#133
pnrobinson
closed
5 years ago
10
check for existence of file in truncate
#132
pnrobinson
closed
5 years ago
1
Add explanatory text to HTML
#131
hansenp
closed
5 years ago
1
Confusing interface of summarize command
#130
hansenp
closed
5 years ago
1
Enhancement/refactor
#129
iimpulse
closed
5 years ago
2
reformating output of counts command in preparation for new HTML code
#128
pnrobinson
closed
5 years ago
0
Add length distribution plot to HTML output
#127
pnrobinson
closed
5 years ago
1
Cross-linked chromatin is digested using one or more restriction enzymes, which results in restriction fragments whose ends re-ligate thereby forming ligation junctions.
#126
pnrobinson
closed
5 years ago
1
Inconsistent CLC values for allign and count command
#125
hansenp
closed
5 years ago
5
Agree on content and layout
#124
hansenp
closed
5 years ago
3
Small to-do in Align
#123
pnrobinson
closed
5 years ago
1
Adapt the text output for align to make it easy to parse for HTML output.
#122
pnrobinson
closed
5 years ago
1
Crash in DigestMap
#121
pnrobinson
closed
5 years ago
6
Introduction for Genes manuscript
#120
pnrobinson
closed
5 years ago
0
Merge Mifsud et al. data
#119
hansenp
closed
5 years ago
1
TAD boundaries
#118
hansenp
closed
5 years ago
3
Add extra strange internal category
#117
hansenp
closed
5 years ago
7
Simplify decision tree in RTD for mapping
#116
hansenp
closed
5 years ago
0
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