issues
search
TobyBaril
/
EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
Other
139
stars
20
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Patch v4.2.4
#106
TobyBaril
closed
6 months ago
0
data for pie chart proportions
#105
baligpanossian
closed
5 months ago
9
Stuck at the "Cleaning Genome" phase
#104
rpianezza
closed
6 months ago
7
102 bug when using soft link to genome
#103
TobyBaril
closed
6 months ago
0
Bug when using soft link to genome
#102
mylena-s
closed
6 months ago
1
Version 4.2.0 - Increased Efficiency and Patch Fixes
#101
TobyBaril
closed
6 months ago
0
Generate soft-masked genome without re-running?
#100
YingChen94
closed
6 months ago
2
GFF attributes and wrong TE classification??
#99
DhakadPankaj
closed
6 months ago
1
R step 12 "no"?
#98
YingChen94
closed
6 months ago
1
Variation in annotation within species/family
#97
lesserof2weevils
closed
6 months ago
2
Limiting Repeatmodeler rounds to 4/5 ??
#96
DhakadPankaj
closed
7 months ago
3
Filtering overlapping repeats for chimers
#95
pellescholten
closed
6 months ago
3
Error while using a custom library
#94
azotta
closed
7 months ago
2
Runtime and Restarting
#93
rpyron
closed
7 months ago
1
Kimura expectations
#92
TCHeaven
closed
7 months ago
0
underprediction
#91
estolle
closed
7 months ago
3
why so many 'unknown' sequences in generated TE lib
#90
Yiguan
closed
7 months ago
2
Annotation accuracy
#89
Song-10-YF
closed
8 months ago
1
Errors in the log file
#88
ekaralashvili
closed
8 months ago
1
TRFMask issue, files not found
#87
Sandandsnow2004
closed
8 months ago
5
Read-only / download
#86
TCHeaven
closed
8 months ago
2
Update TEstrainer_for_earlGrey.sh
#85
TobyBaril
closed
9 months ago
0
Can't locate Thread/Queue.pm
#84
cascoamarillo
closed
9 months ago
3
Update earlGrey - patches for lack of novel repeats
#83
TobyBaril
closed
9 months ago
0
Caused by error: ! unable to find an inherited method for function ‘width’ for signature ‘"logical"’
#82
spoonbender76
closed
9 months ago
5
prevent earlGrey from modifying the original input genome file
#81
estolle
closed
9 months ago
6
EarlGrey "stuck" at Step 7 (?)
#80
cement-head
closed
9 months ago
5
Error: package 'GenomeInfoDb' could not be loaded
#79
ylee-sio
closed
9 months ago
4
package
#78
ylee-sio
closed
10 months ago
0
Clarification on FamDB configuration with RepeatMasker for EarlGrey
#77
cement-head
closed
10 months ago
4
LTRStruct parameter
#76
SamCT
closed
11 months ago
2
Patch 4.0.3
#75
TobyBaril
closed
11 months ago
0
Patch 4.0.2
#74
TobyBaril
closed
11 months ago
0
Patch v4.0.1
#73
TobyBaril
closed
11 months ago
0
usage questions about softmasking/threads/consistency
#72
spoonbender76
closed
11 months ago
5
Execution halted and ERROR: strict merge also failed
#71
M-Asim-Javed
closed
11 months ago
5
Adding softmask option
#70
TobyBaril
closed
11 months ago
0
Soft masking option
#69
ramoseks
closed
11 months ago
3
swapping chromosome names
#68
hy09
closed
11 months ago
2
Biocontainer patch 1
#67
TobyBaril
closed
1 year ago
0
/workspace/EarlGrey/earlGrey: line 83: famdb.py: command not found
#66
spoonbender76
closed
1 year ago
4
error with test file after mamba Installation
#65
rissidaniel
closed
1 year ago
1
TEstrainer error
#64
hy09
closed
1 year ago
1
EarlGrey fails on large genome
#63
SJ-Smit
closed
1 year ago
4
installing earlgrey via conda
#62
SJ-Smit
closed
1 year ago
12
Error in repeat merging, missing '[...].rmerge.gff.filtered'?
#61
bricoletc
closed
1 year ago
10
Update TEtrim.py > deprecated biopython issue
#59
TobyBaril
closed
1 year ago
0
Resume in-progress run
#58
mjacksonhill
closed
1 year ago
3
R Package Incompatibilities
#57
mjacksonhill
closed
1 year ago
7
Adding EarlGrey to bioconda
#56
dirkjanvw
closed
1 year ago
24
Previous
Next