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Townsend-Lab-Yale
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massprf-pipeline
pipeline for genome wide MASSPRF analysis
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Ipython
#20
stanleyjs
closed
7 years ago
0
merge working with master
#19
stanleyjs
closed
7 years ago
0
cache getchromosome
#18
stanleyjs
opened
7 years ago
0
change trimmer to pandas/numpy based vector logical indexing
#17
stanleyjs
closed
7 years ago
0
Variant instantiation uses a ton of memory/cpu time
#16
stanleyjs
closed
7 years ago
1
FastaGenomeAdaptor/ReferenceGenome/VariantGenome support for pre-inserted import
#15
stanleyjs
closed
7 years ago
0
test CodingSequence output
#14
stanleyjs
closed
7 years ago
0
implement process pipeline master class
#13
stanleyjs
closed
7 years ago
0
implement logging
#12
stanleyjs
closed
7 years ago
1
Postprocessing pipeline
#11
stanleyjs
opened
7 years ago
1
Use CSVs to store file pairs
#10
stanleyjs
closed
7 years ago
0
MASSPRF scaling
#9
stanleyjs
closed
7 years ago
0
Codon-wise trimming instead of base-wise trimming
#8
stanleyjs
closed
7 years ago
0
Monitor and reduce memory usage, expand and scope thread usage
#7
stanleyjs
closed
7 years ago
0
merge github branch with local branch, use dedicated version control
#6
stanleyjs
closed
7 years ago
0
Output alignments to txt before trimming
#5
stanleyjs
closed
7 years ago
1
expand valid inputs
#4
stanleyjs
closed
7 years ago
2
unify
#3
stanleyjs
closed
7 years ago
0
output directory
#2
stanleyjs
closed
7 years ago
0
Makefile
#1
stanleyjs
closed
7 years ago
0