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TrEE-TIMC
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circhic
A python library to display HiC data on a circular strip and to integrate genomic data
https://tree-timc.github.io/circhic/
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Releasing 0.4 -> switching to 0.5
#89
NelleV
closed
9 months ago
0
FIX distutils is gone…
#88
NelleV
closed
9 months ago
0
MAINT/FIX Matplotlib changed the default again…
#87
NelleV
closed
2 years ago
0
GitHub actions
#86
NelleV
closed
2 years ago
0
MAINT switch to github actions
#85
NelleV
closed
2 years ago
0
Input data
#84
sarah872
opened
3 years ago
0
DOC: added citation
#83
ijunier
closed
4 years ago
0
MAINT Releasing v0.4.0
#82
NelleV
closed
4 years ago
0
ENH adding support for linear chromosomes in plot_bands
#81
NelleV
closed
4 years ago
0
Linear
#80
NelleV
closed
4 years ago
0
DOC Principle misc updated and re-adding Linear plots
#79
ijunier
closed
4 years ago
0
DOC linear chrom lifting
#78
ijunier
closed
4 years ago
0
DOC Principle added with explanation of circhic
#77
ijunier
closed
4 years ago
0
ENH adding support for linear chromosomes
#76
NelleV
closed
4 years ago
0
MAINT 0.1.0 has been released
#75
NelleV
closed
4 years ago
0
DOC explicative image added
#74
ijunier
closed
4 years ago
0
DOC removing some latex commands
#73
ijunier
closed
4 years ago
0
MAINT py38 build doesn’t like latex
#72
NelleV
closed
4 years ago
1
DOC updating doc structure + small fixes
#71
NelleV
closed
4 years ago
0
DOC HiC -> Hi-C and side-by-side front images resolved
#70
ijunier
closed
4 years ago
0
MAINT reactivating python 3.8
#69
NelleV
closed
4 years ago
0
DOC adding user documentation
#68
NelleV
closed
4 years ago
0
MAINT reactivating py3.8
#67
NelleV
closed
4 years ago
0
DOC Adding schemas of circular contact maps
#66
NelleV
opened
4 years ago
0
DOC table figures in index and added generate_borders in class
#65
ijunier
closed
4 years ago
0
DOC Ter domain aligned in coli map
#64
ijunier
closed
4 years ago
0
DOC misc text updating and file name renaming for better order
#63
ijunier
closed
4 years ago
0
Warnings to be removed
#62
ijunier
opened
4 years ago
0
plot_circular_heatmap_size must be updated
#61
ijunier
opened
4 years ago
1
DOC adding schemas to understand contact maps
#60
NelleV
closed
4 years ago
0
For testing purposes…
#59
NelleV
closed
4 years ago
0
For testing purposes.
#58
NelleV
closed
4 years ago
0
FIX rax/center of all polar plots.
#57
NelleV
closed
4 years ago
0
DOC Reshaping and updating of both gallery and front page images
#56
ijunier
closed
4 years ago
0
DOC examples sorted according to file name and added crescentus examples
#55
ijunier
closed
4 years ago
2
DOC removed datasets/ in technical examples
#54
ijunier
closed
4 years ago
0
DOC technical plots should not diplay real data
#53
NelleV
opened
4 years ago
0
ENH r-axis uses matplotlib's defaults
#52
NelleV
closed
4 years ago
0
ENH/FIX returned object of load dataset more specific
#51
NelleV
closed
4 years ago
0
ax.text() is bugging when using a posy <0
#50
ijunier
opened
4 years ago
3
ENH now allow user to provide fontdict
#49
NelleV
closed
4 years ago
0
FIX stupid API for plot_bands
#48
NelleV
closed
4 years ago
0
Something is wrong in set_genomic_ticklabels
#47
ijunier
closed
4 years ago
1
Something is wrong with plot_bands
#46
ijunier
closed
4 years ago
0
"lengths" is a misleading key in data dict
#45
ijunier
closed
4 years ago
2
slight mismatch between inner circle radius/center and raxis
#44
ijunier
opened
4 years ago
1
FIX tick labels for raxis now match data
#43
NelleV
closed
4 years ago
0
FIX plot works when outer_gdis = 0
#42
NelleV
closed
4 years ago
0
bone_r as the default colormap
#41
ijunier
opened
4 years ago
0
_plot_raxis must be updated
#40
ijunier
closed
4 years ago
4
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