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TravisWheelerLab
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NINJA
Nearly Infinite Neighbor Joining Application
MIT License
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Download links for 0.99-cluster_only point to a different version of NINJA
#46
rpm78
closed
1 month ago
1
Use sse2neon.h for Linux ARM64
#45
martin-g
closed
8 months ago
6
Is this program considering supporting the aarch64 architecture?
#44
z4668640
closed
8 months ago
9
Error: java.lang.ArrayIndexOutOfBoundsException: 10000
#43
J-Calvelo
closed
1 year ago
1
NINJA with large number of leaves
#42
elichienxD
closed
2 years ago
2
not compiling
#41
caonetto
closed
11 months ago
2
Remove OpenMPI dependency
#40
glesica
closed
4 years ago
1
Distance readers have redundant code
#39
glesica
opened
4 years ago
0
Simple cleanup
#38
glesica
closed
4 years ago
0
Unify BinaryHeap types to share code
#37
glesica
opened
4 years ago
0
Simple cleanup
#36
glesica
closed
4 years ago
0
installation error
#35
XClaws
closed
4 years ago
6
2.0 initial cleanup
#34
glesica
closed
4 years ago
0
Usage examples
#33
glesica
opened
4 years ago
0
Documentation comments
#32
glesica
opened
4 years ago
0
Pull in existing AVX code / doc improvements
#31
glesica
opened
4 years ago
1
Sequence generation and naive distance
#30
glesica
opened
4 years ago
0
Pull in cluster branch
#29
glesica
opened
4 years ago
3
Checkpointing tests on distance matrix
#28
glesica
opened
4 years ago
0
Does not compile on OSX - conda recipe
#27
Juke34
closed
4 years ago
6
Changes to attempt bitpacking debug, add "bug notes"
#26
sarahsummerfield
closed
4 years ago
0
Avx debug
#25
sarahsummerfield
closed
4 years ago
1
Simplify and document the makefile and packaging process
#24
glesica
closed
4 years ago
0
Add a manpage
#23
glesica
opened
4 years ago
0
Docker workflow
#22
glesica
closed
4 years ago
1
Formatting and naming
#21
glesica
closed
4 years ago
0
Guard test method
#20
glesica
opened
4 years ago
0
Integrate existing documentation
#19
glesica
opened
4 years ago
0
Add scaffold for testing
#18
glesica
opened
4 years ago
0
Add user documentation
#17
glesica
opened
4 years ago
0
Add high-level functional tests
#16
glesica
opened
4 years ago
0
Unit test distance calculations
#15
glesica
opened
4 years ago
0
Add validation comparison against other tools
#14
glesica
opened
4 years ago
0
Add SSE / AVX detection at runtime
#13
glesica
opened
4 years ago
0
Random tidying up
#12
glesica
closed
4 years ago
2
Use correct arithmetic types for sizes in SequenceFileReader.cpp.
#11
jebrosen
closed
5 years ago
1
Distance SSE Bug
#10
michelwandermaas
closed
6 years ago
1
Add compatibility with stockholm
#9
michelwandermaas
opened
7 years ago
0
Add protein distance calculator support for SSE
#8
michelwandermaas
closed
6 years ago
0
Possibly wrong tree in External Memory
#7
michelwandermaas
closed
8 years ago
1
Add Multiple Threads to DistanceReaderExtMem
#6
michelwandermaas
opened
8 years ago
0
Stack overflow
#5
michelwandermaas
closed
8 years ago
1
File bug
#4
michelwandermaas
closed
8 years ago
4
External Memory Tree
#3
michelwandermaas
closed
8 years ago
0
STDOUT bug
#2
michelwandermaas
closed
8 years ago
1
External Memory Bug
#1
michelwandermaas
closed
8 years ago
1