issues
search
TrigosTeam
/
SPIAT
https://trigosteam.github.io/SPIAT/
Artistic License 2.0
21
stars
8
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Multiple images
#42
LukasHats
opened
1 month ago
1
Predict_phenotypes does not plot density plots
#41
Art-Ink
closed
2 months ago
2
Updated vignette link in README
#40
fuerzhou
closed
3 months ago
0
NA result of crossing_of_crossK() function
#39
navern0net
closed
3 months ago
3
Fixed cluster assignment issue in neighborhood detection
#38
fuerzhou
closed
4 months ago
0
How can we get the neighborhood classification for each cells?
#37
Feng-Zhang
closed
4 months ago
1
Update main branch with development version 1.7.1
#36
fuerzhou
closed
5 months ago
0
Adding feature_colname attribute
#35
Art-Ink
closed
5 months ago
1
clustering problem
#34
JessicaP94
closed
4 months ago
1
Define cell types based on the absence of markers
#33
fuerzhou
opened
8 months ago
0
Automatically batch export of thresholds and images from predict_phenotypes() Function
#32
chujun225
closed
4 months ago
0
Question in Quantifying cell colocalisation
#31
SGIlabes
closed
8 months ago
1
reading in data to SPIAT
#30
cathalgking
closed
4 months ago
5
Incorrect intensity threshold due to zero-inflated distribution
#29
lhollestein
opened
11 months ago
0
Big data set causing R to crash when using "identify_neighbourhoods" with "hierarchical" method
#28
ayhanxian
closed
8 months ago
1
Devel 1.5.1
#27
fuerzhou
closed
1 year ago
0
Not able to generate Seurat Object using 10xgenomics Data
#26
apsuresh
closed
1 year ago
0
Devel
#25
fuerzhou
closed
1 year ago
0
Convert spatialExperiment object into Seurat object
#24
JessicaP94
closed
8 months ago
2
Importing annotation and specifying exclusion (negative) markers
#23
prestigious-bat3868
closed
1 year ago
2
Merge recent updates from devel
#22
fuerzhou
closed
1 year ago
0
Help with marker_prediction_plot
#21
CPUriarte
closed
1 year ago
5
calculate_pairwise_distances_between_celltypes not working
#20
JessicaP94
closed
1 year ago
4
Devel v1.3.1
#19
fuerzhou
closed
1 year ago
0
Move from spatstat.core to spatstat.model.
#18
rubak
closed
2 years ago
2
Suggested tweaks from Bioconductor review
#17
PeteHaitch
closed
2 years ago
0
AUC_of_cross_function.R AUC can > 1
#16
Isaacyz
closed
2 years ago
1
Encountering errors for analysis related to marker intensity.
#15
yuvibim08
closed
2 years ago
2
dimensionality_reduction_plot function not working
#14
yuvibim08
closed
2 years ago
6
Encountering error for plot_cell_categories function multiple times
#13
yuvibim08
closed
2 years ago
2
image_splitter() function is not working
#12
yuvibim08
closed
2 years ago
1
calculate_spatial_autocorrelaton is not working
#11
yuvibim08
closed
1 year ago
4
After deletion of mis-classified cells from the image, TSNE plot is not generating
#10
yuvibim08
closed
2 years ago
3
Scatter Plot not generating
#9
yuvibim08
closed
2 years ago
3
update dev branch with main
#8
fuerzhou
closed
2 years ago
0
Dev
#7
fuerzhou
closed
2 years ago
0
update files
#6
fuerzhou
closed
2 years ago
0
make fig size small
#5
fuerzhou
closed
2 years ago
0
Update README.md
#4
annatrigos
closed
2 years ago
0
Update introduction.Rmd
#3
annatrigos
closed
2 years ago
1
Maria few edits
#2
mblue9
closed
2 years ago
0
Maria few edits
#1
mblue9
closed
2 years ago
0