UNR-CFB lahontan issues

UNR-CFB / lahontan

Lahontan: a flexible, multiscale RNA-seq pipeline

GNU General Public License v3.0

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issues

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add support for MultiQC

#24 rltillett opened 6 years ago
0
Feature request: add a STAR mode

#23 rltillett opened 6 years ago
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Improve Ballgown and Sleuth R scripts

#22 rltillett opened 6 years ago
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edgeR script error

#21 rltillett opened 6 years ago
0
findStranded classifier "false" doesn't lead to unstranded settings to Hisat & fC

#20 rltillett opened 7 years ago
1
add preprocessing feature for raw 4 lane "L00{1..4}" inputs

#19 rltillett opened 7 years ago
1
Merge input data which is split by lanes

#18 Alberto024 opened 7 years ago
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Add path option to makeTrimBlacklist

#17 Alberto024 closed 7 years ago
1
add iterative/progressive fastqc vecscreen trimmomatic workflow

#16 rltillett opened 8 years ago
0
evaluate more file compression tricks (cram)

#15 rltillett opened 8 years ago
0
add mention of non-automatic gene id+desc harvesting to wiki

#14 rltillett opened 8 years ago
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Distribute a Jupyter notebook for results analysis with each project.

#13 TaYpworm opened 8 years ago
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automatically generate GeneID+description text file for Ensembl genomes

#12 rltillett opened 8 years ago
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Create testing data set.

#11 TaYpworm opened 8 years ago
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Automate build.

#10 TaYpworm opened 8 years ago
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Web documentation detailing QC and interpretation of results.

#9 TaYpworm opened 8 years ago
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templatify the publication-targeted methods doc

#8 rltillett opened 8 years ago
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better strand check logic

#7 rltillett opened 8 years ago
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turn specific qc report into generalized template

#6 rltillett opened 8 years ago
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test wiki Running instructions

#5 rltillett closed 8 years ago
0
Add trimmomatic install steps to wiki

#4 rltillett closed 8 years ago
1
Add Python install to build/deployment documents

#3 TaYpworm opened 8 years ago
1
Run documentation.

#2 TaYpworm closed 8 years ago
1
Build documentation

#1 TaYpworm closed 8 years ago
0