UW-GAC wgsaparsr issues

UW-GAC / wgsaparsr

Code for parsing TOPMED variant annotation files produced by the WGSA annotation tool.

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Rockstar is one word

#121 JohnCEarls closed 4 years ago
0
remove semicolon assumption for .pad_dots()

#120 bheavner opened 4 years ago
1
fix .clean_config() warning

#119 bheavner opened 4 years ago
0
more tests for .pad_dots()

#118 bheavner opened 4 years ago
0
error handling

#117 bheavner opened 4 years ago
0
Error in stream_delim_(df, path, ..., bom = bom, quote_escape = quote_escape) : invalid connection

#116 Zhe-JJ-Wang opened 5 years ago
0
validate_config is too aggressive for pivotChar2

#115 bheavner closed 5 years ago
0
update example in the readme file

#114 bheavner opened 5 years ago
0
add validation tests

#113 bheavner closed 5 years ago
0
add tests to test-validate-config (and test-load?)

#112 bheavner closed 5 years ago
0
add zenodo badge with DOI

#111 bheavner closed 5 years ago
0
add pivot_pivot() function

#110 bheavner closed 5 years ago
2
update validate_config() documentation

#109 bheavner closed 5 years ago
1
update .parse_extreme_columns

#108 bheavner closed 5 years ago
0
update .parse_pairs_pick_n internal function

#107 bheavner closed 5 years ago
2
update .parse_pairs_pick_y internal function

#106 bheavner closed 5 years ago
2
add | character for transformation regexes

#105 bheavner closed 5 years ago
1
add type checking to columns

#104 bheavner opened 5 years ago
0
make verbose output more verbose

#103 bheavner opened 5 years ago
0
add output to get_problem_chunk()

#102 bheavner opened 5 years ago
0
remove helper files from tests?

#101 bheavner opened 5 years ago
0
add many tests to test-parse-to-file.R

#100 bheavner opened 5 years ago
0
validate_config() breaks if no parseGroups

#99 bheavner closed 5 years ago
0
updating rlang (2)

#98 bheavner opened 5 years ago
0
Errors if 0 or 1 fields in config file with SNV = TRUE

#97 bheavner opened 5 years ago
1
make .has_header() case insensitive.

#96 bheavner closed 5 years ago
0
add column renaming

#95 bheavner closed 5 years ago
0
rlang updates

#94 bheavner opened 5 years ago
0
add header row functionality to troubleshooting functions

#93 bheavner opened 5 years ago
0
add test to .fix_nulls

#92 bheavner closed 5 years ago
0
change assumptions about snv, indel, dbnsfp

#91 bheavner opened 5 years ago
0
add parse to file test.

#90 bheavner closed 5 years ago
0
dbnsfp output requires snv output

#89 bheavner opened 5 years ago
1
validate_config() assumes .clean_config() has been called for order check?

#88 bheavner closed 5 years ago
1
inconsistent header in output if external header supplied

#87 bheavner closed 5 years ago
5
Add "null value" column to config file, and use it

#86 bheavner closed 5 years ago
0
Add ability to provide header if input file is missing it

#85 bheavner closed 5 years ago
0
consistency: parseGroup and transformation

#84 bheavner opened 6 years ago
0
order is a base function. change config file

#83 bheavner closed 5 years ago
0
update load_config() documentation

#82 bheavner opened 6 years ago
1
freeze 5

#81 rafet2005 closed 6 years ago
6
use readr for .get_first_line

#80 bheavner closed 6 years ago
1
refactor to use readr::read_tsv_chunked()

#79 bheavner opened 6 years ago
1
add tests for troubleshooting utilities

#78 bheavner closed 6 years ago
8
add keep unparsed fields option

#77 bheavner opened 6 years ago
2
get_fields() doesn't work on freeze 5

#76 bheavner closed 6 years ago
0
reorganize columns of parsed output files

#75 jaind closed 5 years ago
0
implement adding new derived fields

#74 bheavner opened 6 years ago
4
look at distinct function

#73 bheavner closed 6 years ago
1
remove legacy freeze 4 code

#72 bheavner closed 6 years ago
0