UtrechtUniversity workshop-computational-reproducibility issues

UtrechtUniversity / workshop-computational-reproducibility

Material for the workshop 'Best Practices for Writing Reproducible Code'

https://utrechtuniversity.github.io/workshop-computational-reproducibility/

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licensing and zenodo slides are both in publishing chapter and project setup chapter

#71 jelletreep opened 1 month ago
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Update git-and-github.qmd

#70 DorienHuijser opened 1 month ago
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rename presentation

#69 jelletreep closed 3 months ago
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include exercise to edit CITATION.cff

#68 nehamoopen opened 5 months ago
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docstring example

#67 nehamoopen opened 5 months ago
1
65 redistribute

#66 chStaiger closed 1 month ago
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Make a distinction between Publishing and Reproducibility

#65 chStaiger closed 1 month ago
1
review preparation chapter

#64 nehamoopen opened 5 months ago
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Introduction, slide 6 repeats dissemination

#63 chStaiger closed 5 months ago
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add git final comic

#62 jelletreep closed 6 months ago
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Update README.md

#61 jelletreep closed 6 months ago
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Restructure repository, GH actions workflow and website appearance

#60 jelletreep closed 6 months ago
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fix chapters contents

#59 jelletreep closed 6 months ago
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Licensing & Archiving

#58 parisa-zahedi closed 6 months ago
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Comments - first setup

#57 chStaiger closed 7 months ago
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track down twitter thread about reproducibility

#56 nehamoopen closed 6 months ago
1
add code snippets for code readability

#55 nehamoopen closed 5 months ago
1
review git & github preparation

#54 nehamoopen opened 7 months ago
1
Links to projects

#53 jelletreep closed 11 months ago
2
Update r package link in slides_documentation.Rmd

#52 jelletreep closed 11 months ago
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Slide 10 docstrings, link doesn't work

#51 jelletreep closed 11 months ago
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Links not working

#50 javimangal closed 6 months ago
1
Fix links in schedule

#49 jelletreep closed 11 months ago
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good practices for commit messages

#48 jelletreep opened 11 months ago
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Update _quarto.yml

#47 jelletreep closed 11 months ago
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Review archiving

#46 chStaiger closed 11 months ago
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revise conda/pip slides

#45 jelletreep closed 11 months ago
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Question: Look into environment.yml and requirements.txt generation and ensure how to always get libraries for the current project and not all the libraries available locally (doesn't always work). Do we assume everyone has pip or anaconda installed?

#44 nehamoopen closed 11 months ago
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Provide GitHub repository templates for simple R & Python projects.

#43 nehamoopen closed 5 months ago
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Alternative for archived R package

#42 hanneoberman closed 7 months ago
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useful resources

#41 nehamoopen opened 1 year ago
2
Substitute retired `R` package

#40 hanneoberman closed 1 year ago
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Slides in the book are not loading

#39 hanneoberman closed 1 year ago
2
content on dependency management

#38 nehamoopen opened 1 year ago
1
overview of feedback and ideas

#37 nehamoopen opened 1 year ago
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Convert to quarto

#36 DorienHuijser closed 1 year ago
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clean up + reorganize repo for Quarto

#35 nehamoopen closed 5 months ago
2
reproducibility in matlab

#34 nehamoopen opened 1 year ago
1
Gitbook content also in markdown?

#33 jurra closed 3 years ago
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template: feedback for reproducing other's project

#32 nehamoopen opened 3 years ago
1
correct docstring content

#31 nehamoopen closed 5 months ago
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change the .gitignore for one made for R

#30 bvreede closed 3 years ago
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Make first draft of collaboration instructions

#29 bvreede closed 3 years ago
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Add slides specifically for dependency management

#28 bvreede closed 3 years ago
1
Sound Improvements: Code Robustness

#27 nehamoopen closed 5 months ago
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Sound Improvements: Code Reusability

#26 nehamoopen closed 5 months ago
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Sound Improvements: Code Readability

#25 nehamoopen closed 5 months ago
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Video Improvements: Project Management

#24 nehamoopen closed 5 months ago
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Adjust .gitignore

#23 bvreede closed 3 years ago
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render book and slides automatically with GA actions

#22 bvreede closed 5 months ago
0