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VEuPathDB
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service-multi-blast
Async BLAST+ query service and supporting libraries.
Apache License 2.0
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Re-examine which endpoints actually require auth.
#124
Foxcapades
closed
2 years ago
0
Log4j config broken resulting in no logging.
#123
Foxcapades
closed
2 years ago
1
Failed jobs being marked as completed.
#122
Foxcapades
closed
2 years ago
1
OOM Errors
#121
Foxcapades
closed
2 years ago
1
Add env var to control the target build to use for blast databases.
#120
Foxcapades
opened
2 years ago
1
Fix issue with child jobs being created with parent query.
#119
Foxcapades
closed
2 years ago
1
maintain and enforce db ordering
#118
Foxcapades
closed
2 years ago
0
Multiple identical multi-sequence jobs created and run.
#117
Foxcapades
closed
2 years ago
2
Blast server should log process ID for blast process.
#116
Foxcapades
closed
2 years ago
0
Organisms/Databases should be sorted before hashing.
#115
Foxcapades
closed
2 years ago
0
Requesting a single sequence appears to spin off a new blast job?
#114
Foxcapades
closed
2 years ago
7
Research: Combined blast database.
#113
Foxcapades
closed
2 years ago
1
Why is mblast slower than ncbi and legacy blast?
#112
Foxcapades
opened
2 years ago
4
MBlast should clean up corrupted state when a job is killed.
#111
Foxcapades
opened
2 years ago
1
Improve job completion detection.
#110
Foxcapades
closed
2 years ago
1
Document sequence reformatting reasoning.
#109
Foxcapades
closed
2 years ago
0
[Superseded by Rewrite] Limit queue input to 1 job per user at a time.
#108
Foxcapades
closed
2 years ago
2
Reformat sequences before storing them.
#107
Foxcapades
closed
2 years ago
0
Catch empty queries.
#106
Foxcapades
closed
2 years ago
2
MultiBlast should catch empty sequences.
#105
Foxcapades
closed
2 years ago
2
MultiBLAST: Sequence with spaces at the start of lines results in an unrelated/invalid error message.
#104
Foxcapades
closed
2 years ago
5
[Superseded by Rewrite] Formatter job marked as completed when it actually failed.
#103
Foxcapades
closed
2 years ago
2
Zip downloads are empty sometimes.
#102
Foxcapades
closed
2 years ago
4
Add JVM args from example repo to dockerfile.
#101
Foxcapades
closed
2 years ago
0
Multi-blast: Stack overflow
#100
Foxcapades
closed
2 years ago
0
Multi-blast: Hunt for connection leaks on userDb
#99
Foxcapades
closed
2 years ago
1
Add metrics to multi-blast for size of the job queue.
#98
Foxcapades
closed
2 years ago
2
Add queue statusendpoint to multi-blast
#97
Foxcapades
closed
2 years ago
2
Move multi-blast to new async platform
#96
Foxcapades
closed
2 years ago
1
Metrics for requests are by job rather than endpoint.
#95
Foxcapades
closed
2 years ago
1
Add JVM Stats to prometheus.
#94
Foxcapades
closed
2 years ago
0
Add a validation endpoint to validate queries before the job is submitted.
#93
Foxcapades
closed
2 years ago
0
Improve sequence validation errors.
#92
Foxcapades
opened
2 years ago
0
Empty lines are part of the query hash when they should not be.
#91
Foxcapades
closed
2 years ago
0
Failure when transferring guest jobs to logged in user on dev sites
#90
ryanrdoherty
opened
3 years ago
1
Issue 87
#89
Foxcapades
closed
3 years ago
0
Check for blast DB when reviving old jobs.
#88
Foxcapades
closed
3 years ago
1
Don't store full path to blast DB
#87
Foxcapades
closed
3 years ago
2
Prod MBlast Error
#86
Foxcapades
closed
2 years ago
3
Include IP or user ID in the log
#85
Foxcapades
closed
2 years ago
1
query sequence should allow spaces and numbers as in https://www.ncbi.nlm.nih.gov/protein/1790350
#84
aurreco-uga
closed
2 years ago
4
Async reports
#83
Foxcapades
closed
3 years ago
0
Fail gracefully on jobs failing due to age (build #)
#82
Foxcapades
closed
2 years ago
1
MBlast Testing TODOs
#81
Foxcapades
closed
2 years ago
1
Introduce a second job queue for "fast" jobs.
#80
Foxcapades
closed
2 years ago
1
Improve blast container logging
#79
Foxcapades
closed
3 years ago
0
Reject requests to the main service for non-zipped reports that have multiple files.
#78
Foxcapades
closed
3 years ago
1
Submit formatter request for single file json on job creation.
#77
Foxcapades
closed
2 years ago
0
Update last modified date for job dirs on hit.
#76
Foxcapades
closed
3 years ago
0
Move size check to primary service.
#75
Foxcapades
closed
2 years ago
1
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