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VanLoo-lab
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ascat
ASCAT R package
https://www.mdanderson.org/research/departments-labs-institutes/labs/van-loo-laboratory/resources.html#ASCAT
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Error when only one segment
#96
hubentu
closed
2 years ago
5
Small fix so ASPCF uses SNPpos[] instead of SNPpos$
#95
tlesluyes
closed
2 years ago
0
Small fix (remove ascat.bc object).
#94
tlesluyes
closed
2 years ago
0
Problem with R source code
#93
ghost
closed
2 years ago
2
Update doc (from v3 branch)
#92
tlesluyes
closed
2 years ago
0
Allow setting of purity parameter
#91
tlesluyes
closed
2 years ago
0
Update from v3.0 branch
#90
tlesluyes
closed
2 years ago
0
Error Running ASCAT
#89
Krishna4369
closed
2 years ago
5
Update v3.0
#88
tlesluyes
closed
2 years ago
0
Ploidy and Purity optimal solution and alternatives
#87
gtsaousis
closed
2 years ago
2
v3.0
#86
tlesluyes
closed
2 years ago
0
Prepapre for v2.5.3
#85
tlesluyes
closed
2 years ago
0
Add TCGA profiles for hg38 (ASCAT v3)
#84
tlesluyes
closed
2 years ago
0
v3.0 data release
#83
tlesluyes
closed
2 years ago
0
Beta release of v3.0
#82
tlesluyes
closed
2 years ago
0
Fix a possible issue when providing rho and psi values
#81
tlesluyes
closed
2 years ago
0
Fix for ascat.plotSunrise with custom boundaries for ploidy
#80
tlesluyes
closed
2 years ago
0
Support for Illumina NovaSeq 6000 platform
#79
bulak
closed
2 years ago
2
Allele based cna analysis on WGS data?
#78
panxiaoguang
closed
2 years ago
7
Sunrise plot labels cause a crash
#77
nurmians
closed
3 years ago
2
Resolution of ASCAT on WGS samples
#76
hannanw
closed
3 years ago
2
Error in startpos2:endpos2 : NA/NaN argument ; when using ascat.aspcf function
#75
xxz19900
closed
3 years ago
1
Add ASCAT profiles for TCGA SNP6 (hg19)
#74
tlesluyes
closed
3 years ago
0
genotype prediction function for sequencing data without matched normal
#73
hastj7373
closed
3 years ago
5
Cannot pull the package to my R environment
#72
D0g4
closed
3 years ago
3
version 2.4 and 2.5.2
#71
xingyi19
closed
3 years ago
3
Changing min rho, error in sunrise plot.
#70
georgecresswell
closed
3 years ago
1
ascat.GCcorrect - reading in the GCcontentfile error
#69
BJWiley233
closed
3 years ago
3
Error in png
#68
StefaniaTuveri
closed
4 years ago
2
downstream analysis of ASCAT
#67
wanhui5867
closed
4 years ago
3
Running ASCAT via panel sequencing
#66
vymao
closed
4 years ago
5
#Error: predictGermlineHomozygousStretches returns empty list where ascat.aspcf() fails: ghs[[sample]] out of boundary
#65
chris-kreitzer
closed
4 years ago
2
Getting tumor and normal LRR/BAF info
#64
vymao
closed
4 years ago
5
Running ASCAT with CEL data
#63
vymao
closed
4 years ago
0
GC wave correction
#62
zmiimz
closed
4 years ago
1
How to describe copy number changes of ploidy-gain sample?
#61
wanhui5867
closed
4 years ago
2
ASCAT could not find an optimal ploidy and cellularity value for sample S1
#60
Yang-Airong
closed
4 years ago
8
New platforms: IlluminaASA, IlluminaCytoSNP850k and IlluminaGSAv3
#59
tlesluyes
closed
3 years ago
0
Getting logR from integer copy number
#58
beginner984
closed
4 years ago
3
X and Y do not show up in segmentation plot
#57
jazberna1
closed
4 years ago
5
error in ascat.GCcorrect
#56
jazberna1
closed
4 years ago
4
All aberrant fraction >.95
#55
lculibrk
closed
4 years ago
2
fixed create_distance_matrix for manual psi boundaries
#54
elarosecadieux
closed
2 years ago
0
does ascat strip leading chr from chromosomes?
#53
keiranmraine
closed
4 years ago
1
issue on install ASCAT packages
#52
HyunjunNam
closed
5 years ago
2
Fix bug when manual ploidy boundaries fall outside strict ploidy boudaries
#51
elarosecadieux
closed
2 years ago
0
Added flags to restrict ASCAT ploidy solution search space
#50
elarosecadieux
closed
5 years ago
0
Error in apply(corr_tot, 1, function(x) sum(abs(x * length_tot))/sum(length_tot))
#49
DanXu-git
closed
4 years ago
7
low aberrant cell fraction for cell line samples
#48
ThomasGro
closed
5 years ago
1
many failed arrays for Broad CCLE cell line panel
#47
ThomasGro
closed
5 years ago
3
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